Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02560 TGGCGAAACAAAAGCAATGTCCGATCATCCCACTCCCACAAACATGAACGACCAGCTCTCCAATTGGGTCTGGGCTACAATAGAATTCAGTTTGAGATTGGGAAGAACCATAGGATTTCGTACCCTGAACGTGCTTGCGTTAAGTCTTCTTCCCATGAAGGTAGTGGAGAGGCTCGACCCATGGATCAGGTGCCAACGGTGATTCCTCAAGTTTCTCACTTGGGTTGGGGACATTGGTATACTCTCAGGGAGCTTGAGGATGCCACCAATGGGTTTGCCCCAGAAAATGTTATTGGCGAAGGCGGCTATGGAATCGTTTATCATGGTATCTTGGAGGACAACACTAATATTGCAATTAAGAATTTGCTCAATAATAGGGGACAAGCTGAGAGAGAGTTTAAGGTTGAAGTGGAAGCTACAGGACGAGTTCGTCACAAGAATTTAGTGAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTTGTGTATGAGTATGTTGACAATGGTAACTTGGAGCAATGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACTGCAAAAGGGTTAACTTATCTTCACGAGGGGTTGGAACCAAAAGTTGTACACCGTGATATTAAATCAAGCAACATTTTGCTTAGTAAGCAGTGGCATTCAAAGGTGTCAGATTTTGGCCTTGCCAAACTCCTTGGCCCTGAGAGCAGCTATATCACAACCCGTGTAATGGGTACATTTGGATATGTAGCTCCTGAATACGCAAGTACTGGTATGTTGAATGAACGAAGTGATGTGTATAGTTTTGGAATTCTTACAATGGAAGTAATTACAGGCGGGAATCCAGTTGATTATAGTAGGCCTCCAGAAGAGGTGAATTTAGTGGATTGGCTCAAGAAGATGGTCAGTAACAGAAATCCAGAGGGAGTGTTGGATCCCAAGCTCCCTGAGAAACCAACTTCAAGGGCACTAAAGCAAGCCCTTCTTGTAGCCTTACGCTGCACAGACCCTAATGCACAAAAGCGACCTAAAATGGGGCATGTAATACACATGCCTGAAGCTAAAGATCCCCCTTACAAAGAGCTAACAATCATTTCTGCTAAGTTAATTCAACCTCACTATGGTGCTAGTTAA 1167 0.4422 WRNKSNVRSSHSHKHERPALQLGLGYNRIQFEIGKNHRISYPERACVKSSSHEGSGEARPMDQVPTVIPQVSHLGWGHWYTLRELEDATNGFAPENVIGEGGYGIVYHGILEDNTNIAIKNLLNNRGQAEREFKVEVEATGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWHSKVSDFGLAKLLGPESSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILTMEVITGGNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKQALLVALRCTDPNAQKRPKMGHVIHMPEAKDPPYKELTIISAKLIQPHYGAS. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02560 388 FunFam Putative receptor-like serine/threonine-protein kinase 168 376 - -
Seca9g02560 388 FunFam Probable serine/threonine-protein kinase At1g01540 72 167 - -
Seca9g02560 388 Gene3D Phosphorylase Kinase; domain 1 68 167 - -
Seca9g02560 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Seca9g02560 388 Gene3D Transferase(Phosphotransferase) domain 1 168 373 - -
Seca9g02560 388 PANTHER OS01G0323000 PROTEIN 40 371 - -
Seca9g02560 388 Pfam Protein kinase domain 95 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02560 388 SUPERFAMILY Protein kinase-like (PK-like) 67 366 IPR011009 -
Seca9g02560 388 CDD STKc_IRAK 98 362 - -
Seca9g02560 388 ProSiteProfiles Protein kinase domain profile. 92 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02560 388 ProSitePatterns Protein kinases ATP-binding region signature. 98 120 IPR017441 GO:0005524
Seca9g02560 388 SMART serkin_6 92 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02560 Seca-Chr9 38752142 38753930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02560 80 359 Trihelix Transcription Factor Family AT1G68690 46.831 9.37e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca9g02560 Pkinase 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02560 - - gmx:100797440 652.514