Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02555 ATGGAGTGGGTTCGTGGACAGTCTCTTGGCAGTGGAAGCTTCGCCATTGTCAATTTAGTTATACCCACAAACGCTTCTACACCTCCCACAGCCGTCAAGACCTCCGATGTTTACACCTCGTATTTGCTCAAGAACGAGGAACATGTTCTCAATCGCATAGGATCTTGCCCGCAAATCATCAAGTGTTTTGGCCACGATCAAACCTTAGAAAACGGTGAATTGTACTACAATCTGTTTCTTGAATACGCTTCTGGTGGCACTCTCGCTGATCAGCTCAAGAACCACGGTGGCCGGTTCCCGGAATTCCTCGTTCGCGGATACACGAGGTCCATCGTCGAAGGACTCAAGCACGTTCATGCCAATGGTTTCGTCCACTGCGACGTGAAGCTCCAAAACATCCTCGTTTTCGAGAATGGCAACGTTAAGATTGTGGACTTTGGGCTTGCGAAGGAAACAGGGGAGAAACAGAGTCAAAGGTTGGAGTTCAGGGGGACTCCCAGGTTTATGTCGCCGGAATCAGTGAACGAGAATGAGTACGAGTCACCGGTGGATATATGGGCTCTGGGCTGTGCCGTCGTGGAGATGGTGACCGGAAAACCCGCCTGGAACGTCCGCAGCGGGTCAAATATATGGTCATTGTTGATGCGAATTGGGGTGGGAGATGAATTGCCGTTGATTCCAGATGAGTTGTCAAAAGAGGGGAAGGATTTTCTGGAAAAGTGTCTGGTGAAGGATCCAAAGAAGAGATGGAGTGCAGAGATGCTTTTGAAGCACCCTTTTGTCGCTGACGACACTGTTTCATTCATCGATTCATTGCCATTGCCATCTCCATCACCGACAACCCACTTCGATTTCCCGCATTGGTCTTCCACTACAACGGCTTCGCTTCCCTCTTCACTGGGTTCCGACGAATGGCGTGAACGGGACATTGGGCCTTCGCTGACGGACCGGGTCCGTCGGCTGGTCACGGATCAGGGACCAACGGATCATTGGTCAGAATCGGATAGCTGGATTATTATTAGGTCATAG 1029 0.5053 MEWVRGQSLGSGSFAIVNLVIPTNASTPPTAVKTSDVYTSYLLKNEEHVLNRIGSCPQIIKCFGHDQTLENGELYYNLFLEYASGGTLADQLKNHGGRFPEFLVRGYTRSIVEGLKHVHANGFVHCDVKLQNILVFENGNVKIVDFGLAKETGEKQSQRLEFRGTPRFMSPESVNENEYESPVDIWALGCAVVEMVTGKPAWNVRSGSNIWSLLMRIGVGDELPLIPDELSKEGKDFLEKCLVKDPKKRWSAEMLLKHPFVADDTVSFIDSLPLPSPSPTTHFDFPHWSSTTTASLPSSLGSDEWRERDIGPSLTDRVRRLVTDQGPTDHWSESDSWIIIRS. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02555 342 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Seca9g02555 342 SMART serkin_6 3 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02555 342 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02555 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Seca9g02555 342 CDD STKc_MAPKKK 2 261 - -
Seca9g02555 342 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Seca9g02555 342 Gene3D Transferase(Phosphotransferase) domain 1 2 289 - -
Seca9g02555 342 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 297 - -
Seca9g02555 342 ProSiteProfiles Protein kinase domain profile. 3 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02555 Seca-Chr9 38702257 38703285 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02555 1 341 MAP Kinase Kinase Kinase AT5G67080 48.747 3.94e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca9g02555 Pkinase 3.9e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02555 - - gmx:100797177 479.944