Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02553 ATGGACTGGGTTCGTGGACAATCTCTTGGTAGTGGAAGCTTCGCCACTGTCAATTTAGTTATACCCACAAACGGTTATACACCTCCCACAGCCGTCAAGTCCTCCAACGTTCACACCTCGTATTTGCTCAAGAACGAGGAACAAGTCCTCAATCGCATAGGATGTTGCCCGCAAATTATTAAGTGTTTTGGCCACGATCAAACCTTAGAAAACGGTGAAGAGTACTACAATCTGTTTCTCGAATACGCTTCTGGTGGCACTCTCGCTGATCAGCTCAAGAACCACGGTGGCCGGTTCCCGGAATCTCTCGTTCGCCGATACACAAGATCCATCGTTGAAGGTCTCAAGCACATTCATGTCAATGGTTTCGTCCACTGCGACGTGAAGCCCCAAAACATCCTCGTTTTCGACAATGGCGATGTGAAGATTGCGGACTTTGGGCTTGCGAAGGAAACAGGGGAGAAAGAGAAACAGAGTCAGAGGTGGGAGTTCAGGGGAACTCCTATGTTTATGTCGCCGGAATCGGTAAACGACAACGAATATGAATCACCGGCGGATATATGGGCTCTAGGCTGCGCCGTCGTGGAGATGGTGACCGGAAAACCGGCCTGGAACGTCCGCATCGGGTCGAATATATGGTCGTTGTTGATTCGAATTGGGGTGGGAGAAGAATTGCCGTTGATTCCAGATGAAATGTCAAAACAGGGGAAGGATTTTCTGGAGAAGTGTTTCGTGAAGGATCCAAAGAAGAGATGGAGCGCAGAGATGCTTTTGAAGCACGCCTTTCTTGCAGATGACACTGTTTCATTCAATGATTCATTGCCATCATCATCTCCAAGAACACACTTCGATTTCCCTCATTGGGCTTCCACTCTAACGGCTTCGCTTCCCTCTTCACCGGATTCTGACGAATGGCGTGAATTTGTGCCTTTGCCGGGAAACCGAATCCGGTGGCTGGACACGGATCAGGGACCAATGGATTGGTCAGAATCGGATAGCTGGACTAATGTTAGGTCAAATTAG 1023 0.4888 MDWVRGQSLGSGSFATVNLVIPTNGYTPPTAVKSSNVHTSYLLKNEEQVLNRIGCCPQIIKCFGHDQTLENGEEYYNLFLEYASGGTLADQLKNHGGRFPESLVRRYTRSIVEGLKHIHVNGFVHCDVKPQNILVFDNGDVKIADFGLAKETGEKEKQSQRWEFRGTPMFMSPESVNDNEYESPADIWALGCAVVEMVTGKPAWNVRIGSNIWSLLIRIGVGEELPLIPDEMSKQGKDFLEKCFVKDPKKRWSAEMLLKHAFLADDTVSFNDSLPSSSPRTHFDFPHWASTLTASLPSSPDSDEWREFVPLPGNRIRWLDTDQGPMDWSESDSWTNVRSN. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02553 340 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Seca9g02553 340 SMART serkin_6 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02553 340 MobiDBLite consensus disorder prediction 320 340 - -
Seca9g02553 340 Pfam Protein kinase domain 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02553 340 FunFam Mitogen-activated protein kinase kinase kinase 17 2 292 - -
Seca9g02553 340 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Seca9g02553 340 ProSiteProfiles Protein kinase domain profile. 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02553 340 CDD STKc_MAPKKK 2 263 - -
Seca9g02553 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 308 - -
Seca9g02553 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Seca9g02553 340 MobiDBLite consensus disorder prediction 326 340 - -
Seca9g02553 340 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Seca9g02553 340 Gene3D Transferase(Phosphotransferase) domain 1 90 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02553 Seca-Chr9 38693199 38694221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02553 1 338 MAP Kinase Kinase Kinase AT5G67080 49.719 2.89e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca9g02553 Pkinase 9.5e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02553 - - aprc:113869133 502.286