Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02551 ATGGATGAGGACATACTGAAAACTTCACCAAGTGATGACAGCAGCATGGACATGATGACAATGATGATGCAAATGGATAAGTTCCCTGAATTATGTGATCCCTTTTATAACACTACTCTCAACTACACAGAGAATGAATTCTCAGGTGGAAGCTCCACCACAACCACCACTCTCCCTGTTTTCTCCAACAACGTTAACCAAAATGTAACTCCACCACCTTCCTCTGCTAATTTCGTTAACAATCCTCTCCAACAACCCATGACACTTCCCGCTTCAATTTCATACCCTGCATCTGAGAAAAAGAGTTCTATTGCTGCTATGAGAGAGATGATTTTCCGAGTAGCAGTGATGCAGCCTATTCATATAGACCCGGAATCTGTTAAGCCACCAAAGAGACGGAATGTGAAGATATCAAAGGATCCTCAGAGTGTGGCAGCGAGGCACAGGAGAGAAAGAATAAGCGAGAGAATAAGGATCCTGCAGAGATTAGTTCCTGGTGGGACGAAAATGGACACGGCTTCTATGTTAGATGAAGCCATACACTACGTGAAATTCTTAAAGAAACAAGTGCAGACACTGGAACAGGCAGGGGCAACTAGATCAGTACCCTTAAATGTTGTTGGCTTCCCAGGTGTAAATTATTCTGCTTTAGTAAGGGGTTGCCAACCTAGTCAAATGCTGCCTTCTAATTCTAAACAAATCTTTAGTTGA 711 0.4276 MDEDILKTSPSDDSSMDMMTMMMQMDKFPELCDPFYNTTLNYTENEFSGGSSTTTTTLPVFSNNVNQNVTPPPSSANFVNNPLQQPMTLPASISYPASEKKSSIAAMREMIFRVAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRSVPLNVVGFPGVNYSALVRGCQPSQMLPSNSKQIFS. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02551 236 CDD bHLH_AtIND_like 138 194 - -
Seca9g02551 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Seca9g02551 236 Pfam Helix-loop-helix DNA-binding domain 147 186 IPR011598 GO:0046983
Seca9g02551 236 Coils Coil 176 196 - -
Seca9g02551 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 198 IPR036638 GO:0046983
Seca9g02551 236 SMART finulus 143 192 IPR011598 GO:0046983
Seca9g02551 236 FunFam BHLH transcription factor 140 203 - -
Seca9g02551 236 Gene3D - 136 202 IPR036638 GO:0046983
Seca9g02551 236 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 50 211 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02551 Seca-Chr9 38676796 38677506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02551 25 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 58.427 7.04e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g02551 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02551 - - gmx:100796649 282.722