Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02536 ATGTCGCAACGGTCGGTGCCGGCGCCGTTCTTGACGAAGACGTATCAGTTGGTGGAGGATCCGGCGACGGACGAGGTGATATCATGGAGTGAGAGTGGCAACACTTTTGTTGTGTGGAAACATGCGGATTTTGCAAAGGATTTGCTTCCTAATTACTTTAAGCACAACAACTTCTCTAGCTTTGTTCGCCAGCTCAACACCTATGGATTCCGAAAGATCGTGCCAGACAAATGGGAATTCGCGAACAAGCATTTCAAGCGAGGCCAAAAGGAGCTCCTCTCTGAGATCAAACGCCGCAAGACCGTGACCCAACCGTCGCAACAGCCCCCGGAGCCCGGAAATTCCGGCGCCGACGGCAACTCTCCGTCGAACTCCGGTGGCGATGACTTGGGATCCAGCTCGACGTCGACCTCATCCTCCGATTCGAAGAATCAAGGAACATTGGAGACAACGGCTCCTCAGTGCGCGAATTTATCGAGCGAGAACGAGAAACTGAAGAAGGATAACGAAACGCTAAGCTGGGAGCTGGCACGTGCGAAGAAGCAGTGCGATGAGCTAGTAGCTTTTCTGAGGGACCGTATGAAGGTGGGTCCCGATCAGATAGATCGCATAATGCGGCAAGAAAACTGTGGATATGATGAAAACGCGGTAGGTGAAGGTGAAGGTGGAGGAAAAGAGTGTTTGAAACTGTTTGGTGTTTGGTTGAAAGATGAGACTTCTACAGAGAAAAGAAACAACCACAAGAGAGGCCGTGAAGACCAAATGGGCTTCGGTGGGCCTCATGCCACTAAGGTGTCAAAGACTGTTGTTGACTTTGGTGTCATGATGAAGAGCGGCAAGCAAACGGTGATTGATCTTCTGGATTTGGTGGGTCGACGTCCATGCTTGCCCATCGTTCTCTGTTGCAGCACCCGCGACGACCTTGACACTCTCTGCTCCTCTCTTTCCGCCCTCCCCTTCATTTCCTCTTCTGCTTTGTACAGTGACCTTGCTGAGGATGAACGTGCTCTTATTTTAGAGAAATTTAGGCAAGTGACAACAAGGTGGAACCAGATTAATCATGCTGGGATAGGGAATGAGGATGAGGTAGGGAAAGATGATGGATCTCATATGATTATTGTAACAGACGCTTGCCTTCCTCTCCTAGCTTCCGGGGAGTCTCCCATGAATGCTCATCTTCTGATTAACTATGAGTTACCAGCAAAGAAGGAAACATATGGAAGGCGTTTGGCAGCTTGTTTATCAGCTGATGGAATTGTCATCAATATGGTTGTTGGTGGGGAAGTGGTAACACTAAAAAGCATTGAAGAAAGCACCAATATTGTCATGCCAGAGATGCCAATGCAAATTCTTGACATTTTATGA 1365 0.4872 MSQRSVPAPFLTKTYQLVEDPATDEVISWSESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANKHFKRGQKELLSEIKRRKTVTQPSQQPPEPGNSGADGNSPSNSGGDDLGSSSTSTSSSDSKNQGTLETTAPQCANLSSENEKLKKDNETLSWELARAKKQCDELVAFLRDRMKVGPDQIDRIMRQENCGYDENAVGEGEGGGKECLKLFGVWLKDETSTEKRNNHKRGREDQMGFGGPHATKVSKTVVDFGVMMKSGKQTVIDLLDLVGRRPCLPIVLCCSTRDDLDTLCSSLSALPFISSSALYSDLAEDERALILEKFRQVTTRWNQINHAGIGNEDEVGKDDGSHMIIVTDACLPLLASGESPMNAHLLINYELPAKKETYGRRLAACLSADGIVINMVVGGEVVTLKSIEESTNIVMPEMPMQILDIL. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02536 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 452 IPR027417 -
Seca9g02536 454 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02536 454 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 236 IPR027725 -
Seca9g02536 454 MobiDBLite consensus disorder prediction 99 160 - -
Seca9g02536 454 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Seca9g02536 454 MobiDBLite consensus disorder prediction 241 255 - -
Seca9g02536 454 MobiDBLite consensus disorder prediction 98 166 - -
Seca9g02536 454 MobiDBLite consensus disorder prediction 241 260 - -
Seca9g02536 454 Coils Coil 155 182 - -
Seca9g02536 454 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02536 454 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02536 454 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02536 454 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02536 454 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g02536 454 Gene3D - 263 454 IPR027417 -
Seca9g02536 454 Gene3D - 2 101 IPR036388 -
Seca9g02536 454 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02536 Seca-Chr9 38546285 38561597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02536 2 245 HSF AT4G36990 54.510 3.07e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca9g02536 HSF_DNA-bind 5.6e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02536 K09419 - gmx:100791543 399.823