Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02507 ATGTCATCATCATCCAATTCGCCGTGCGCGGCGTGTAAATTTCTAAGGCGGAAATGCACGCAAGAGTGCGTGTTTGCACCGTACTTTCCACCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTTGGTGCGAGCAACGTGGCGAAACTGCTCAACGAACTCAACACCGCGCAGCGAGATGACGCCGTAAAGTCCCTGGCTTACGAGGCGGAGGCACGGCTGAGGGACCCTGTGTACGGCTGCGTGGGCCTTATCTCCGTCCTCCAACACAAGCTGAGGCAGATCGAGGTGGAGCTCAACAATGCCAAGAAGGAGCTTGCAACTTATATTGGGCCCCAGGCTCTGCAAGGCATGCCCACCACTATTCTCCAACAACACCCTAACAACCCTTTTGCCTCTTCCCTTTACCCTTATAACGGTAACATGCCGGCAGTGACGGCGAGTACGCAGTTGATGATTCGGGATCCTCAGCCGCAGCAACATCAGATCTTGGAAGCTCAGCAATTGGCTGCGGCTGTGGCCGCAAGAGAGCAGCAGGAGATGTTTAGGAGCTACGAGCATCAACAGCAACAAGAGTTTCTGAGGTTCAGTGGTGGGTTCGAGGTGGGTTCGGTTTCTTCTGGTGGTGGGTTCAACCAGGTGTCCCCAGCTGCTGCTGCTTCAGCTGATCAATTGTCTCCCTCTTTAGCTTTGGGATCCTTCGACAACACATACCATATGCAGCAACCACAACAAGGAGAACCTCATCCACACCCTCATCATCATCACCCTCACCCTCACCCGCACCATCTTCCACTTCAGGCACAGCTACTGCTCCCTCCTCAGCAGAAGCAAGCACAGTCACAAACCCAGCAGTCACAACTGTCCCTTCACCAGCAACAGTCCGAAAGCGAGGAGTGTAGGAGTGTCGGTCCATCTTGTTGA 930 0.5419 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNTAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIEVELNNAKKELATYIGPQALQGMPTTILQQHPNNPFASSLYPYNGNMPAVTASTQLMIRDPQPQQHQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFEVGSVSSGGGFNQVSPAAAASADQLSPSLALGSFDNTYHMQQPQQGEPHPHPHHHHPHPHPHHLPLQAQLLLPPQQKQAQSQTQQSQLSLHQQQSESEECRSVGPSC. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02507 309 Coils Coil 87 107 - -
Seca9g02507 309 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Seca9g02507 309 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Seca9g02507 309 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 277 - -
Seca9g02507 309 MobiDBLite consensus disorder prediction 273 309 - -
Seca9g02507 309 MobiDBLite consensus disorder prediction 241 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02507 Seca-Chr9 38214614 38218491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02507 3 241 AS2 family AT5G66870 52.768 1.58e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca9g02507 LOB 2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02507 - - gmx:102664012 372.474