Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02505 ATGGAGCTGAGCTTGGATTTGAGTTTGGCTTTTGTCCCCAAAACCGTTTCCCTCTTTCTTGGCGACGTTTCTCGGAGCAGAGACAACTCTGAGAAACTTGCCATGCTTGAGGACTTTATCCAGAGATTGGAGGATGAAATGAGGAAGGTTGAGGCTTTCAAACGCGAGCTCCCTCTTTGCATGCTCCTTGTAAACGATGCCATAGCAAGATTGAAAGAGGAAAAACTACGGTGTATCGGAATGCAAGATCCACCTGTAACAGAGGAAGAATTCATGCCGCTGAAGACCAATTATGGAGGAAATGGAAAAGGACCTTCAATCATGGGAAAAGAAAGCTGTGACAAGAAGAATTGGATGAGCTCAGTTCAGCTATGGAACACTGAAACCAAAAATAAGACCTTTTTTTTGCAATGGCAGAAGGGTGGAGAAAGTGTTCAACAACTGGATCAGAAGAACGATAGTGGAGGAGCATTTATCTCATTTAATGGCAATTCATTTGTCCCTAAAGAGGTTTCGAAAGTTCCGAGCTTTAGTTTGATGAGTCCAGCTTCTGAACTAAGCCATAGCAATTCCAAGAGTGGTTGTGGAGGTAGTAGCTCTGGCTCTTCTTTGCTTCGCGTTGAGATACAGAGTCAACCACAACCACCGCAACATTTGCAGCAGAACCCGAGGAAACAAAGGCGATGCTGGTCACCGGAGCTTCATCGGCGTTTTGTTGACGCGCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGCCTCACAAATGATGAAGTGAAAAGCCACTTGCAAAAGTACAGGCTTCATATCAGAAGATTCCCAGTTGACCAGACTAATAATGGCTTATGGATGGCACAAGATCAATGTGTAGATAAATCAAAGGGGAACCTATCACAGTCTTGTTCTCCACAAGGTCCTCTTACGCCCCTTGTCTTGGGAGGGTCTGTTAAGGGTCTCTCAAGTCCTGGCCGAAACAGTATGGATGCAGAAGATGAGCAATCAGATTGCCGTAATTGGAAAGGTGGGATCCAGCAGCAACTAGAAGCTGATAATCAGAGCCTCTAA 1098 0.4536 MELSLDLSLAFVPKTVSLFLGDVSRSRDNSEKLAMLEDFIQRLEDEMRKVEAFKRELPLCMLLVNDAIARLKEEKLRCIGMQDPPVTEEEFMPLKTNYGGNGKGPSIMGKESCDKKNWMSSVQLWNTETKNKTFFLQWQKGGESVQQLDQKNDSGGAFISFNGNSFVPKEVSKVPSFSLMSPASELSHSNSKSGCGGSSSGSSLLRVEIQSQPQPPQHLQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHIRRFPVDQTNNGLWMAQDQCVDKSKGNLSQSCSPQGPLTPLVLGGSVKGLSSPGRNSMDAEDEQSDCRNWKGGIQQQLEADNQSL. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02505 365 Pfam Myb-like DNA-binding domain 227 278 IPR001005 -
Seca9g02505 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 225 280 IPR006447 GO:0003677
Seca9g02505 365 MobiDBLite consensus disorder prediction 325 346 - -
Seca9g02505 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 350 IPR044787 GO:0003700|GO:0006355
Seca9g02505 365 FunFam Myb family transcription factor 224 282 - -
Seca9g02505 365 Gene3D - 224 281 - -
Seca9g02505 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 282 IPR017930 -
Seca9g02505 365 MobiDBLite consensus disorder prediction 181 202 - -
Seca9g02505 365 Coils Coil 36 56 - -
Seca9g02505 365 SUPERFAMILY Homeodomain-like 223 283 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02505 Seca-Chr9 38189629 38191247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02505 1 275 G2-like Transcription Factor Family AT4G37180 40.000 1.89e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca9g02505 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02505 - - pvu:PHAVU_002G021400g 467.618