Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02487 ATGTTTCTCCATCAGCAGACAAATTTCGCAATTGTGATCACAATCTTAATCTTCTTAGTGAGCACAACAAGAACACAAAACCTCCCAAACTGTGAGAACCGTTGCGGAGAGGAGTCCGTGCAGTACCCTTTTAGCTTCTCTGAAGGTTGTGGAATCAAACTAAACTGTAACAACAGCCAAGTCCAAGTGGGTGATTTTCTGGTTCAGAACATAACCAGCAGCAGCATATTCATCGATGTCCCTGCAAAATGCAACCGTACCATGCAATCCATTCATCCACTTTTCAGTGACAACTTTGCTCCCACACGGAACAATAGTTTTCTAGTGCAAGATTGCAAAGCTCCTCTGGGTGGCTGCGTTATTCCCGCTTCAAGTTTTGTGGGGAATTGTGATAACAGAAGTGGTAATATCAGTTGTTTTACACAGCAGCAGCAACAGGATCAAGAAGTGGATGTTGTGTCATATGAGGAATTGAACCAAACTGGGTGCAATTACTTGTTCTCAGCAGTTGCTGCCATTGAGAATTCGCTGCAGTTTCAGGTGGTTGAGTTGGGGTGGTGGCTTCAAGGGTCGTGTCAATGCTCTCCCAACGCTACCTGCACAATGGTTCATCTCAAAGAAGGGAGCTTTGGATACCGGTGTCAATGTCCAAATGGTTTCCAAGGAGACGGCTTCGCCAACGGCACCGGTTGCCGGAGAGGTCCAAGCTGCAGTGCTTCAACACTGACGTCTGGGGGGTGTGGGAATGGAGCCAAAATTGGTGTTATCGTCGGAGTGATAGTAACTGGAGCTGTGGTCGTGGTTGCTCTCTTTGTCCTATGCTACTGTGCCAGGCGCCGTTCTACTTGGTTGAGAAAACATACCAGAGTAAAGCTCCTATTACGTGAAGCTGCAGGCAACTCTAGTGTACCTTTATACCCTTATAAAGAAATAGAGAAGGCAACAAATTCTTTCTCTGAGAAACAGAGGCTGGGAAATGGGGCTTTTGGTACCGTTTATGCTGGAAAACTTCATAATGATGAGTGGGTTGCTATAAAGAAGATAAGGTATAGAGATACTAATAGTGTTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAATTTAGTTCGCCTCCTAGGTTGCTGCATAGAGGAAGGAGAGCAGATACTTGTTTATGAATATATGCCCAATGGAACACTATCTGAGCATTTGCAAAGAGAAAGGGGTAAAGGTCTTCCATGGACAATAAGACTTACCATTGCTGCTGAAACTTCTCATGCTATAGCATATCTCCATTCTGCAATTCATCCTCCAATTTACCACAGAGACATAAAATCCAGTAATATACTCTTGGATTATAACTTCAAATCTAAAGTAGCTGATTTTGGGCTTTCTAGGCTTGGCATGACAGAGACATCACATATCTCAACTGCCCCACAAGGGACTCCAGGTTATGTGGATCCCCAATATCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTCTACAGCTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCATGAAAGTGGTTGATTTTGGTCGACCTCAGAGTGAGGTTAATTTAGCTGCACTTGCTGTTGATAGAATCAGAAGGGGTTCTGTAGATGAGATCATAGATCCCTTCCTTGAACCACATAGAGATGCTTGGACACTATATTCCATTCATAAGGTGGCTGAGCTGGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGACAGAAGTAGCTGAGGAGCTAGAACATATCAGACGCAGTGGATGGGCAACTATGGAGGAAACTATATGCTTGGCTTCATCAATTGGGTCCACCAGTTCATCACCTCGCAATGGAAGTGAGAAGTCACTGGGTGGTGGTATTAAGTTCAAGAAACCAGGGCAAGGGAGTGAGGGATTGATTGTTCCACAGAAGACCGAGAGTTTCTTGCATTCTATGGAGATGGAGGTGAAGGACAGCTCCCCTGTATCGGTGCATGATCCTTGGTCAAGTGGACACAGCTCACCTTCAACAAACAGCTTGTTGGGGAATGTCGTTCGGTGA 2070 0.4464 MFLHQQTNFAIVITILIFLVSTTRTQNLPNCENRCGEESVQYPFSFSEGCGIKLNCNNSQVQVGDFLVQNITSSSIFIDVPAKCNRTMQSIHPLFSDNFAPTRNNSFLVQDCKAPLGGCVIPASSFVGNCDNRSGNISCFTQQQQQDQEVDVVSYEELNQTGCNYLFSAVAAIENSLQFQVVELGWWLQGSCQCSPNATCTMVHLKEGSFGYRCQCPNGFQGDGFANGTGCRRGPSCSASTLTSGGCGNGAKIGVIVGVIVTGAVVVVALFVLCYCARRRSTWLRKHTRVKLLLREAAGNSSVPLYPYKEIEKATNSFSEKQRLGNGAFGTVYAGKLHNDEWVAIKKIRYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSEHLQRERGKGLPWTIRLTIAAETSHAIAYLHSAIHPPIYHRDIKSSNILLDYNFKSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFGRPQSEVNLAALAVDRIRRGSVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMTEVAEELEHIRRSGWATMEETICLASSIGSTSSSPRNGSEKSLGGGIKFKKPGQGSEGLIVPQKTESFLHSMEMEVKDSSPVSVHDPWSSGHSSPSTNSLLGNVVR. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02487 689 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 676 IPR044652 GO:0004672
Seca9g02487 689 MobiDBLite consensus disorder prediction 657 689 - -
Seca9g02487 689 SUPERFAMILY Protein kinase-like (PK-like) 300 591 IPR011009 -
Seca9g02487 689 MobiDBLite consensus disorder prediction 666 689 - -
Seca9g02487 689 Gene3D Laminin 192 227 - -
Seca9g02487 689 MobiDBLite consensus disorder prediction 609 623 - -
Seca9g02487 689 FunFam Wall-associated receptor kinase-like 20 394 603 - -
Seca9g02487 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Seca9g02487 689 Gene3D Phosphorylase Kinase; domain 1 279 393 - -
Seca9g02487 689 MobiDBLite consensus disorder prediction 609 639 - -
Seca9g02487 689 SMART serkin_6 318 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02487 689 Pfam Protein tyrosine and serine/threonine kinase 321 590 IPR001245 GO:0004672|GO:0006468
Seca9g02487 689 ProSitePatterns Protein kinases ATP-binding region signature. 324 347 IPR017441 GO:0005524
Seca9g02487 689 Gene3D Transferase(Phosphotransferase) domain 1 394 607 - -
Seca9g02487 689 CDD EGF 191 224 - -
Seca9g02487 689 FunFam Wall-associated receptor kinase-like 14 285 393 - -
Seca9g02487 689 ProSiteProfiles Protein kinase domain profile. 318 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02487 Seca-Chr9 38010071 38014698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02487 31 689 Receptor kinase-like Gene Family AT2G23450 58.616 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca9g02487 PK_Tyr_Ser-Thr 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02487 - - gmx:100779130 1021.15