Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02477 ATGGACAATAATGATGATGAATATGTTGTTCATTTGGACAATGATAACGATCCGAGTTTTCGTTGTAGTGTCAGCGCTGATGATAGTACGAGTGAAGAGGATTATGATTTGGGTGATAATAGTGAGCCGAATAATGTAGATGCAACGGAAGAAGAATATAAAAAGATAATAGACTTGACTGTTGAAGATATATCAAGTATGGAGTTTTGTAGTGAAACTGAAGTTTGTGAGTTTTATACTTTGTATGCAAAATTACATGGATTTGTGATGAGGAAAGATGATGTTGCTCGAGATTATCATGGAAATTTGATTATGCGTCAGTTGGTGTGCAATAGGGAGGGAAGGAGAGATAAAAAACACTTCATGAGGGTAGATAGAAAAAGGGCTCACAGACCAATCACACGAACTAAATGTGAAGCTAGGTTGCGGGTACACTTTGATTATAGATCCTCAAAATGGAAAGTGGTTGCATTTGAGGAGTCTCATAATCATGAGCTTACCCCTCCCAAATGCATACACTTAATTTCTGCATACCGTAAGTTGAGTGATGGGGATAAGGCTCAGGCTCAAAGTTTACACTCTTATGGTGTTAGAACCTGTCATATAATGGGATTCATGTTGGCTCAAAAGGGGGGGTACGCTGGCCTTGGTTTTAACAAGAAGGATTTGCAAAACTACTTGGATGAGCAAAAGCGTGGTAGGATAAAAGATGGGGATGCACATGCTGCCTTAAGCTATTTAGTAGGTAAGGCTGACAATAACCGCACTATGTTTTGTAGAGCCACAATTACAAATGATGGTAAATTGAATAACCTTTTTTGGGCTGATGCAACTAGTAGAGCTGATTTTCAGTGTTTTGGAGATGTTCTTGCATTCGATGCAACATACAAGAAGAATAGATACAATAAGCCATTGGTTATTTTCTCTGGCTGCAATCATCACTTGCAGACCATAATATTTGGATGTGCTTTGGTCTCTGATGAAAAGGTGGAGACATATAAGTGGCTTTTAGAAACCTTCTTGGAAGCAATGTCAAACAAATTTCCGAAAGCAGTAGTCACAGATAGTGATGGTTCAATGAGGGAGGCTATAAGACAAGTATTTCCAGATGCAGCCCATAGACTTTGTGCATGGCACTTACACAAGAATGCATGTGAGAATGTTAAAAATCCTCATTTTTTAGAGGATTTCAAAACAACAATGTATTCCATTTTTTCCCCTGCTGAATTTGAAATTTTTTGGAGTAGGATGGTGAGGAGACATGGTCTTGAAGGTAATAGATGGGTTTGTAAAACTTATGAAAACAAGCAGATGTGGGCTACTGCTTACTTGCGCGATATATTTTTTGGTCGCATAAGAACTACTTCACAATGTGAAGGTATTAACTCTTTGTTAAAGTCATATGTCAAGAAGAAGAATACATTGGTTGATTTCTTGCACAATATGGAACAAGTTATGAGACAGTATAGAAACAATGAACTTGTTGCTGATTTTAAAGATATTTATACAGAACCTGTGATAACTACCTCTTTGTATGAGCTTGAGAGGCATGCTTCAAAGATTTTTACTCTAGAGATTTTCAGAGAAGTAAAGTCGGAGATTGAAGAAGCTGGTGCCTTAGTTGTTAATGAGCAATCACAAAATGGACAGCATTTGATGTTTCAGATGAGCAAATTTCGAGTCCCTGATTCTGAAATCGTTGTTATATATGATAGAGTTGAGTTGAAATTCTTGTGTGATTGTAGGAAATATAAATCCCGTGGCATCCCGTGCTCACATATTTTTTGTTCAATGAAACATATGCATATGGATTCAATTCCAAATAGTTTAATATGCAAGCGTTGGACGAAGTGTGCTAAGAGTGACTTTATTTCTTCAGTTCAGAATGATGAAATTGATTCAAAAATTGTGACTACAGCCCGACATGGTGCTCTAGCTGCTATCTCTGACAGTATTTTTGAAGTTGCCTCGCAAAAAGGTGAACTTTTCAATGAGGTAAGAGATGATTTGTTGAAACTTTATGATAAAATAGTGAGGAGGACAGATGCACGCAGCATGCATACATCTTCTGTACAAGTTGGAGATCTCACCGTGGTGAAGACAAAAGGAGCTCCTATGAAGAAAAAATATGGAAAGAAAAGAAAAGTTTGTTCTCATTGTGGTAGAAGTGGTCATAATATTGCAAGATGCCCAAAGTTTCATCATCCGGATGATGAAACACCTATGGTTAATGGGTTATCACAATCTGCTTGTGATGTCATGTTAAGTCAGGTATGTGAAGAAAAAGTAGAGCAATATAATTCAGATCTGTACTAG 2316 0.3731 MDNNDDEYVVHLDNDNDPSFRCSVSADDSTSEEDYDLGDNSEPNNVDATEEEYKKIIDLTVEDISSMEFCSETEVCEFYTLYAKLHGFVMRKDDVARDYHGNLIMRQLVCNREGRRDKKHFMRVDRKRAHRPITRTKCEARLRVHFDYRSSKWKVVAFEESHNHELTPPKCIHLISAYRKLSDGDKAQAQSLHSYGVRTCHIMGFMLAQKGGYAGLGFNKKDLQNYLDEQKRGRIKDGDAHAALSYLVGKADNNRTMFCRATITNDGKLNNLFWADATSRADFQCFGDVLAFDATYKKNRYNKPLVIFSGCNHHLQTIIFGCALVSDEKVETYKWLLETFLEAMSNKFPKAVVTDSDGSMREAIRQVFPDAAHRLCAWHLHKNACENVKNPHFLEDFKTTMYSIFSPAEFEIFWSRMVRRHGLEGNRWVCKTYENKQMWATAYLRDIFFGRIRTTSQCEGINSLLKSYVKKKNTLVDFLHNMEQVMRQYRNNELVADFKDIYTEPVITTSLYELERHASKIFTLEIFREVKSEIEEAGALVVNEQSQNGQHLMFQMSKFRVPDSEIVVIYDRVELKFLCDCRKYKSRGIPCSHIFCSMKHMHMDSIPNSLICKRWTKCAKSDFISSVQNDEIDSKIVTTARHGALAAISDSIFEVASQKGELFNEVRDDLLKLYDKIVRRTDARSMHTSSVQVGDLTVVKTKGAPMKKKYGKKRKVCSHCGRSGHNIARCPKFHHPDDETPMVNGLSQSACDVMLSQVCEEKVEQYNSDLY. 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02477 771 ProSiteProfiles Zinc finger SWIM-type profile. 564 602 IPR007527 GO:0008270
Seca9g02477 771 ProSiteProfiles Zinc finger CCHC-type profile. 717 732 IPR001878 GO:0003676|GO:0008270
Seca9g02477 771 MobiDBLite consensus disorder prediction 1 47 - -
Seca9g02477 771 Pfam MULE transposase domain 289 383 IPR018289 -
Seca9g02477 771 Pfam FAR1 DNA-binding domain 77 167 IPR004330 -
Seca9g02477 771 PANTHER OS01G0519700 PROTEIN 61 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02477 Seca-Chr9 37961541 37963856 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g02477 MULE 7.1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02477 - - ccaj:109792835 848.195