Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02466 ATGGAAGTACTTCCTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCCCTCAGCGGAGTTCAGGAACAGCTTTTGTATGCCAGGAAGAACCTAATTGCCCCGAAAATGGTGAACAAGCTAAATTGGCAGATGGTCAACTGATTGAATCATCAGATAACATGCAAGGGCCGCATATAGAAAGCCAGGGTGAAGGGAAACAGACTGTTTGTAATTTGTTGGCTAATTCAGATTGTCAATGCATTGGAGCTTCATGTAGTGACTGTCAAGTGGAAGATCAAAAGGAATACTGTGGTTTCCATGATTTTGAAGATGACGTGATAAATGGACCTTGCTTAACCTCTGAGAACTCTCTCTCTGTTGTGGATACCATTGAAAGTGAATCACCAAACAATAGTAGGGAAGGAGACTTGTCATTTTCTGAACCCAAGTGGCTAGAGGGGGATGGATCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAAGCTGGTATCCGATGTTCAAGGGCTGACTGGCCGTTATCAACTTTGAAAGCAAAACCAACTCATGACCGAAAGAAATATTTTGTCATATTTTTTCCACACACAAGGATTTATTCTTGGGCAGATATGCTGCTTGTTAGATCAATCAATGAGTTTCCCCATCCAATTGCATACAAGACTCATCAGGTAGGATTGAAAATGGTAAAAGACTTAACAGTTGCACGGCGGTTTATAATGCAAAAGCTAGCTGTTGGCATGCTGAACATTGTCGATCAGTTTCATTTTAATGCTTTGACAGAAACTGCCCGTGATGTGAAAGTCTGGAAGGGTTTTGCTATGGAGGCTTCTCTTTGCAATGGTTATTCTGATTTTGGAAGAATGCTTCTAAAGCTACATAATAGCATACTGCAGCACTACATAAATGCTAACTGGTTGCACCACTCTTCTCATTCTTGGGTTGAACGATGTCAGAGTGCAAATAGCGCCGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCAACACTCTCTGGGATGGACCTGTGCAACCAATGTTAGGTTCTGAATGGAAAACCTGGAAGCATGATGTAATGAAATGGTTTTTGACTTCCCCTTCCTTATCTAGCAGCAAAGGCACACAGCAGCAGATTTCTGATGATTCATACCAAACAAACCTTCAGGTTTGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGAAACACATTCTTCACAAGTGGAAATCAAGGGTTCAGATCACTCTATTACTCTTGAGACTGACCCTCTCTTCTTTAAGAATCAGGACACATTGAGCACATTAGCAGCTGAGACTTGTAATAAACAGGAAGATGTTAGGGAGGTATCTTTGGCAACTGATTTTCCTAGTAACTTAACCAATAAATGGAATGAAATTGTAGTTGAGGCTGCTGATTCTGATTTCTTGCATACCAAAGGAATGGAATTGACACCTATAAATGAAATGGCTGTTGCAAAATCTGTAGAACCTGGTAGTAAAAATCGACAGTGTATAGCTTATATTGAATCCAAAGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTATACTGTTGTGTGCATTTGTCATCCCGTTTTTTGGGCAGCTCTTCAAAAGCTGAAAAGCCAGTTCCAGTTGATACTCCTATGTGTGAAGGTACAACTGTTCTGGGTACTAGATGTAAGCACCGTGCCCTACCTGGTTCTTTATTCTGTAAGAAACACCGGCCCCATGCTGAAACAGAACAGATCTCGAGTTTACCCCAGAATATACTAAAGAGGAAACATGAAGAAAATTATACTGGTTCAGAGGACATGTTCTGCAAAGACCTGGTATTAGTAGATGTTGAAGGTCCACTGCAAGTGGATCCAGTGTCATCCATTGCTGGTGATACCTTACATGGAGAAAGCAACTTATCTGAGAAGCTCGTGCATTCTGAAAATGATCATAGTGTAATGGAGGCACTGAACTGCATAGGTTCTCCTCCCTACGATAATAGGAATCCTTGTACGGAAGCTCCTAAACGTTATTGCTTGTACTGTGAAAGACACCTTCCGAGCTGGCTTAAACGTGCAAGAAATGGGAAAAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAGCTCATGGGAGCAAAAGGTACATCTGCATAAAGCATGTGAGCTTTTTTACAGACTATTCAAAAGCATTTTATCACTAAGAAACCCAGTTCCTAAGGATGTCCAATTCCAGTGGGCTTTGGCTGAAGCCTCTAAAGATACTAGTGTTGGAGAATTTTTTACGAAGTTGGTTCATCGTGAAAAAGCGAGAATCAAATTGATGTGGGGATTCAATGATGACATAGATCTATCCTCTGTCATGGAAGAACAACCTCTCTTGCCATCCACAATTAATGATAGCTTTGATAATGAAAATGCCATTAAGTGTAAGATATGCTCAGCAGAATTTCCTGATGACCAAGCACTTGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAGTGGCTATTTAGAGGTTATGCATGTGCTATTTGTTTGGATTCTTTTACTAACAAGAAACTGTTAGAAACTCATGTTCAGGAGAGACACCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGTAGTCATTTTGGAAATGCTGAACAATTATGGCAGCATGTTTTATCAGTTCATCCTGTTGATTTTAAGCCATCAAAAGCTCCTGAGCAGCAAACTTTGTCTACTGGCGAAGATTCACCAGTAAAACATGACCAGGGAAATTCAGCCTCTTTGGAAAATAATTCTGAGAATGCAGGTGGTTCACGGAAGTTTGTTTGCAGGTTCTGTGGGTTGAAATTTGATTTACTACCTGACCTAGGTAGACATCACCAAGCTGCTCATATGGGACCCAATCTGGCTAGCAGCCGCCCTGCTAAGAGGGGAGTTCGGTATTATGCATACAAACTAAAATCTGGTAGACTTAGCCGCCCTAGATTTAAAAAAGGTTTAGCAGCTGTATCATACAGGATGAGAAATAAGGCTAATGCTAATTTAAAGCGATGTATTCAGGCAACAAACTCACTTGGAGGGGAAGGAAAAACTGTACAGCCTCAACTAACGGAAACAACAAATATCAGTGGATTGACAGAACATCAATGTTCAGCTGTTGCGAAAATTTTGTTTTCAGAGATTCAGAAAACAAAACCTCGGCCTAACAATCTTGATGTTATATCAATTGCTCGCTCTGCTTGCTGCAGAATTAGTCTTGCAGCCTCACTGGAGGAGAAATATGGAATTCTGCCTAAAAAGTTGTATTTGAAGGCAGCAAAACTGTGCAGCGAGCATAACATTGTTGTGAATTGGCACCAGGAGGGGTTTGTTTGTCCTAGAGGTTGTAATATGTTGAAGGATCAAGCATTGCTCTCTCCTTTAGCATCTCTTCCTAATGGTTCTGTAATGCCAAAATCTGTAAATATATCTGATCCTGCAAGTGATGAGTGGGAGGTGGATGAGTTTCACTGCATCATCAGTTCACCTAGTTTAAAATTTGGTTCACTGCAAAAGGCTATAGTCTTGTGTGATGACATTAGCTTTGGGAAGGAATCAGTTCCAGTGATATGTGTGGTAGATCAAGAACTTTTGCATTCTCTACATACGCAGAGGTCTAATGAACAAGATTTGGACTCTTCTAAACCTTGGGAGAGCTTTACCTATATTACAAAGCCAATGCTTGATCAATCCCTTAGTCTTGATTCAGAGAGTCTGCAATTAGGATGTGCTTGCTCATATTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGGTAATGACTATGTTGATGCTAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATGATATTGGAGGAAGGTTACCTTGTCTATGAGTGTAACCATATGTGCAGGTGCAATAAATCCTGTCCAAACAGAGTATTGCAGAATGGAGTACGAGTCAAACTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCGTTAAGGGCTGGTGAAGCTATTCTACGTGGCACATTTGTGTGCGAGTACATTGGAGAGGTTTTAGATGTGCAGGAAGCGCACAACAGGCACAAGAGCAATACCAGATATGGCACAGGGAATTGCAGTTATTTCTATGACATCAATGCTCGTGTTAATGATATGAGCAGATTGATTGAAGGGCAGGCCCAATATGTAATTGATGCTACTAAATATGGAAATGTGTCAAGGTTCATCAATCATAGTTGCTCGTCCAATCTTGTCAGTCACCAAGTTCTCATAGAGAGCATGGATTGTGAGCGTACACATATTGGTCTTTATGCAAGTCGAGATGTAAGTACTCTCATCTACTGGCCTATTTCCTTGAGAATGATCCAACGTCTATGA 4473 0.4102 MEVLPCSGVQYAGESDCPQRSSGTAFVCQEEPNCPENGEQAKLADGQLIESSDNMQGPHIESQGEGKQTVCNLLANSDCQCIGASCSDCQVEDQKEYCGFHDFEDDVINGPCLTSENSLSVVDTIESESPNNSREGDLSFSEPKWLEGDGSVALWVKWRGKWQAGIRCSRADWPLSTLKAKPTHDRKKYFVIFFPHTRIYSWADMLLVRSINEFPHPIAYKTHQVGLKMVKDLTVARRFIMQKLAVGMLNIVDQFHFNALTETARDVKVWKGFAMEASLCNGYSDFGRMLLKLHNSILQHYINANWLHHSSHSWVERCQSANSAESVELLKEELFDSILWNDVNTLWDGPVQPMLGSEWKTWKHDVMKWFLTSPSLSSSKGTQQQISDDSYQTNLQVCRKRPKLEVRRAETHSSQVEIKGSDHSITLETDPLFFKNQDTLSTLAAETCNKQEDVREVSLATDFPSNLTNKWNEIVVEAADSDFLHTKGMELTPINEMAVAKSVEPGSKNRQCIAYIESKGRQCVRWANDGDVYCCVHLSSRFLGSSSKAEKPVPVDTPMCEGTTVLGTRCKHRALPGSLFCKKHRPHAETEQISSLPQNILKRKHEENYTGSEDMFCKDLVLVDVEGPLQVDPVSSIAGDTLHGESNLSEKLVHSENDHSVMEALNCIGSPPYDNRNPCTEAPKRYCLYCERHLPSWLKRARNGKSRIVSKEVFTELLRDCSSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALAEASKDTSVGEFFTKLVHREKARIKLMWGFNDDIDLSSVMEEQPLLPSTINDSFDNENAIKCKICSAEFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNAEQLWQHVLSVHPVDFKPSKAPEQQTLSTGEDSPVKHDQGNSASLENNSENAGGSRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPAKRGVRYYAYKLKSGRLSRPRFKKGLAAVSYRMRNKANANLKRCIQATNSLGGEGKTVQPQLTETTNISGLTEHQCSAVAKILFSEIQKTKPRPNNLDVISIARSACCRISLAASLEEKYGILPKKLYLKAAKLCSEHNIVVNWHQEGFVCPRGCNMLKDQALLSPLASLPNGSVMPKSVNISDPASDEWEVDEFHCIISSPSLKFGSLQKAIVLCDDISFGKESVPVICVVDQELLHSLHTQRSNEQDLDSSKPWESFTYITKPMLDQSLSLDSESLQLGCACSYSTCCPETCDHVYLFGNDYVDAKDIFGKPMRGRFPYDENGRMILEEGYLVYECNHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWALRAGEAILRGTFVCEYIGEVLDVQEAHNRHKSNTRYGTGNCSYFYDINARVNDMSRLIEGQAQYVIDATKYGNVSRFINHSCSSNLVSHQVLIESMDCERTHIGLYASRDVSTLIYWPISLRMIQRL. 1491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02466 1490 ProSitePatterns Zinc finger C2H2 type domain signature. 823 844 IPR013087 -
Seca9g02466 1490 ProSitePatterns Zinc finger C2H2 type domain signature. 891 912 IPR013087 -
Seca9g02466 1490 ProSiteProfiles Pre-SET domain profile. 1271 1347 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca9g02466 1490 SMART preset_2 1207 1334 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca9g02466 1490 Gene3D SET domain 1193 1477 IPR046341 -
Seca9g02466 1490 Pfam Zinc finger C2H2-type, 3 repeats 857 982 IPR040689 -
Seca9g02466 1490 MobiDBLite consensus disorder prediction 921 952 - -
Seca9g02466 1490 ProSiteProfiles Zinc finger C2H2 type domain profile. 958 986 IPR013087 -
Seca9g02466 1490 MobiDBLite consensus disorder prediction 919 952 - -
Seca9g02466 1490 Pfam Pre-SET motif 1210 1342 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca9g02466 1490 Pfam SET domain 1361 1475 IPR001214 GO:0005515
Seca9g02466 1490 SMART c2h2final6 889 912 IPR013087 -
Seca9g02466 1490 SMART c2h2final6 958 981 IPR013087 -
Seca9g02466 1490 SMART c2h2final6 855 878 IPR013087 -
Seca9g02466 1490 SMART c2h2final6 821 844 IPR013087 -
Seca9g02466 1490 ProSiteProfiles Zinc finger C2H2 type domain profile. 855 878 IPR013087 -
Seca9g02466 1490 ProSiteProfiles SET domain profile. 1350 1485 IPR001214 GO:0005515
Seca9g02466 1490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1475 - -
Seca9g02466 1490 ProSitePatterns Zinc finger C2H2 type domain signature. 960 981 IPR013087 -
Seca9g02466 1490 SUPERFAMILY SET domain 1199 1475 IPR046341 -
Seca9g02466 1490 SMART set_7 1350 1482 IPR001214 GO:0005515
Seca9g02466 1490 Gene3D Classic Zinc Finger 815 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02466 Seca-Chr9 37847685 37861818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02466 135 1476 C2H2 Transcription Factor Family AT2G23740 52.286 0.0 1384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca9g02466 Pre-SET 5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02466 - - gmx:100786757 2528.44