Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02463 ATGGGAATAGCAACACCGCCACTTCTCTCTCATCACTTGAAGAAGACACACTCAAACGCCTTGGATTGTTCCAATTCTATGTCCCAAGATTATCAGCAAGGAATCTTCACGTTCTCGAATGGGTTCGAGAGATCATCAGCGCAGGCGCAAATCCGGAGGGACAACAAAGTGAGGTTGCAGCAAGGGTTCGAGGCAGCACCACCACCGGCATTAGTAGGGATAGAAGAAGACCAACCGGGAGGACTTCCAGTGTATGAAACCGCCGGGATGTTGTCGGAGATGTTTAATTTCGCTCCCGGCGGTGGTGAATTGTTGGAACAACAACACCAACCTCCCATGACGGCGTCGTTTCGGTCGTCAAGGCCAGAAGCAGTTGGAAGCGAGTGGTACGGTAGTAACAGACAAGGGATGGTGATAACTGGTTTGGGAGATGGAAAGAATCAAAACAATAGCCAGATTTCAAGTATGAATACTGCAGACTCAGCAGCTGCCATGCATCTTTTTCTCATGAATCCTCAAACGAGATCGCCTTCTCCTCCTCCTCCTCCTGCAGCTTCTTCCACACTCCACATGTTGCTTCCCAATCCTTCGTCTAATTCACTTCAAGGTTTTACTGGTTCGGGAGGGTCTTTTGGTCAATTCACTTGGGGTCAAGAAGGAGGCACCACTGGCACTGCAGGAGGTGTTGTGGAAGGACAAGGTCTTTCATTATCACTGTCCTCTTCGTTGGAAGCGGCAAAAGCGGAGGAATTGAGGATGGGAGATAGTGGTTTTCTATTTTACAATCAAGGAGGAGGAGGGCCATATCATCCGTACAAGAATCACCATCAGGCATTGCATTTACAAGGAGGAGGACAGCATAATAACCACCAAGGATTCGGTTCAACCTCCTTAGGTGTAGTCAATGTTCTCAGAAATTCAAAATATGTGAAGGCTGCTCAAGAATTGCTCGAAGAGTTTTGCAGTGTTGGAAGGGGTCACTTTAAGAAGAGCAGGCAGAATTCAAACCCTAATAATTCAAATCCCGGTGGCGGTGGTTCTTCATCGTCGTCAAAAGACCCTCCTCCACCTCTGTCAGCGGCGGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCGATGCTTGATGAGGCATGTAATCTCTCTTTCTGTTCTCCTCTCACCCTCTCTCGCTCATCAAGAGTCAAGGTGGACCGAAGATACAACCACTACTGCGAACAAATGCAAATGGTAGTGAATTCATTTGACTTAATAATGGGTTTCGGTGCGGCAGTTCCATACACGGCACTGGCACAGAAAGCAATGTCAAAACACTTCCGGTGTCTGAAGGATGCGATAGCAGCACAGCTGAAGCACAGTTGTGAGGTTCTTGGAGAGAAAGATGGAGCAGGGAGTTCAGGTTTGACAAAGGGAGAGACACCAAGGCTTAAGATGCTAGAGCAAAGCTTAAGACAACAAAGGGCATTCCACCAAATGGGAATGATGGAACAGGAAGCTTGGAGACCCCAAAGAGGGTTGCCTGAACGATCTGTCAACATTTTAAGAGCCTGGCTTTTCGAGCATTTTCTTCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAGCAGAGTGTGCAGAAGAGAGAGAAAAGAGCAATAGTGGTCACCAAGCACAAACTCCAACCACACCACCAGCATCAACAGCAACAGCGCCACCACCCCCAACAACAGCCAAAAGATCCGATATCAATGCCACTGAAAGCGACCCTTCACTCCTTGCAATCAATAGACAACCCTTCTCGGAAAACCAAGCAAACCACTCCTCCACCACGGCCATCAGCGCCACCGCCTCTGAGGTGGCGCCACCCGTGTCTCAATGCTTTGACTCAGATCTGCCACCACCACCACACAGATCAATTATGACCAGCGATGACACGTGTCGCTTGGTTTCAGCAGATTATGGGACCGCTTCTGCTGCTGACATTGGATCCACTCTCATTAGATTTGGGACCACAGCCGGTGACGTGTCACTCACCTTAGGGCTACGCCACGCCGGCAACATGCCTGCTGCAGATAAAACTTCTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2214 0.486 MGIATPPLLSHHLKKTHSNALDCSNSMSQDYQQGIFTFSNGFERSSAQAQIRRDNKVRLQQGFEAAPPPALVGIEEDQPGGLPVYETAGMLSEMFNFAPGGGELLEQQHQPPMTASFRSSRPEAVGSEWYGSNRQGMVITGLGDGKNQNNSQISSMNTADSAAAMHLFLMNPQTRSPSPPPPPAASSTLHMLLPNPSSNSLQGFTGSGGSFGQFTWGQEGGTTGTAGGVVEGQGLSLSLSSSLEAAKAEELRMGDSGFLFYNQGGGGPYHPYKNHHQALHLQGGGQHNNHQGFGSTSLGVVNVLRNSKYVKAAQELLEEFCSVGRGHFKKSRQNSNPNNSNPGGGGSSSSSKDPPPPLSAADRIEHQRRKVKLLSMLDEACNLSFCSPLTLSRSSRVKVDRRYNHYCEQMQMVVNSFDLIMGFGAAVPYTALAQKAMSKHFRCLKDAIAAQLKHSCEVLGEKDGAGSSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAECAEEREKSNSGHQAQTPTTPPASTATAPPPPTTAKRSDINATESDPSLLAINRQPFSENQANHSSTTAISATASEVAPPVSQCFDSDLPPPPHRSIMTSDDTCRLVSADYGTASAADIGSTLIRFGTTAGDVSLTLGLRHAGNMPAADKTSPFSVRDFGAI. 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02463 737 MobiDBLite consensus disorder prediction 328 355 - -
Seca9g02463 737 MobiDBLite consensus disorder prediction 575 615 - -
Seca9g02463 737 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 183 585 - -
Seca9g02463 737 SMART HOX_1 502 566 IPR001356 GO:0003677
Seca9g02463 737 CDD homeodomain 502 563 IPR001356 GO:0003677
Seca9g02463 737 Coils Coil 565 585 - -
Seca9g02463 737 SUPERFAMILY Homeodomain-like 504 569 IPR009057 -
Seca9g02463 737 SMART prehox3 298 450 IPR006563 -
Seca9g02463 737 Pfam Homeobox KN domain 519 558 IPR008422 GO:0003677|GO:0006355
Seca9g02463 737 Gene3D - 505 567 - -
Seca9g02463 737 Pfam Associated with HOX 303 449 IPR006563 -
Seca9g02463 737 ProSiteProfiles 'Homeobox' domain profile. 499 562 IPR001356 GO:0003677
Seca9g02463 737 MobiDBLite consensus disorder prediction 328 360 - -
Seca9g02463 737 FunFam BEL1-like homeodomain protein 4 505 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02463 Seca-Chr9 37815942 37823588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02463 1 549 Homeobox Transcription Factor Family AT4G36870 50.891 8.49e-147 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca9g02463 POX 2.8e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02463 - - cave:132186732 819.305