Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02461 ATGGGTTGGTTTGCCAAGTTGCTTAAGGGCTCCAACCATAAAATTTCACGAGGACAATATCATGGCAAATATGGAGATGATAGAATTTGGGATAATCATCAGAGTTCAGTGGATGATTTGACAGATATTGAGAAAGAAGAACTTGATTGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCAGAAAGGGAAAAAAGTTGTCGAGGACGACTCTCAATCTGAAGATGAGGAACTTTGTAAAATTGATGAGGAGGAAGATGAACATCTTAGTAAAATTCAACCAGAGGAAGATGAACATCTTGGTAAAGTTCAACTAGATGAAGATGAACATCTTGGTAAAGTTCAACAAGATGAAGATGAACATCTTGCTAAGATTCAACAGGAAGAAGAACGTCTTGCTAAAGATCAACTTGAGGAAGATGAGCAACTTGCAAGGGCAATTCAAGAAAGTTTGAAAATTGATTCTCCTCCTCGATATGACAATGATTCTTTATTTCAATCTCTTCCCAACCTCTTTCCACCTGGATACAGAATCTGTGCTGGATGCAACACTGAGATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGCTGTCTGGCATCCACAATGCTTCCGCTGTCATGCTTGCCATTTGCCAATAACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCCTGCTATAGGGAGAAACATCACCCAAGATGTGATGTTTGCAAAAACTTTATCCCAACTAATTCAGCTGGCCTCATTGAGTACAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGTACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGCCAAGGGATACACAATATCTTTTGCTTGATGATGGTCGAAAGCTGTGTTTTGAGTGTCTAGACTCAGCAATTATGGATACTCATGAATGCCAACCACTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCGCTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTCTGCTTGTCGGAAGAACAAACTGTCACCACCATTTTAAAGAGACCAAGGATCGGGGAAGGATACCGAGTCATGGACATGATAACTGAGCCTTATAGGCTGATCCGTCGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGGTCAATCCTAGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAACCTGAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCACATGTGGTTAGAATCAGAGCTCTATTCTGGATCTGGGATTGATGGTGCATCATCTTCGTCCTCGTCCTCGTCCTCGTCCTCATCCTCATCCTCATCATCGCCTTCCTCATCCTCATCTGCATCATCAAAGAAGGGTAAACGGTCAGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAGTCAGATTCCTCCTCAGCATATGGAGATGGTTTCAGATTGGGTAACCAGGCAATGCTTAAGTATGGGCTCAAAAGGACCCTTGACCATATCCAAATGACCGGAAGTTTTCCGTATTGA 1671 0.4219 MGWFAKLLKGSNHKISRGQYHGKYGDDRIWDNHQSSVDDLTDIEKEELDCAIALSLSEEDQKGKKVVEDDSQSEDEELCKIDEEEDEHLSKIQPEEDEHLGKVQLDEDEHLGKVQQDEDEHLAKIQQEEERLAKDQLEEDEQLARAIQESLKIDSPPRYDNDSLFQSLPNLFPPGYRICAGCNTEIGHGRFLSCMGAVWHPQCFRCHACHLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDTQYLLLDDGRKLCFECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILKRPRIGEGYRVMDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGIDGASSSSSSSSSSSSSSSSSPSSSSSASSKKGKRSDFEKKLGEFFKHQIESDSSSAYGDGFRLGNQAMLKYGLKRTLDHIQMTGSFPY. 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02461 556 ProSitePatterns LIM zinc-binding domain signature. 179 213 IPR001781 -
Seca9g02461 556 PANTHER PROTEIN DA1-RELATED 2 3 556 IPR045218 -
Seca9g02461 556 SMART lim_4 178 230 IPR001781 -
Seca9g02461 556 MobiDBLite consensus disorder prediction 473 498 - -
Seca9g02461 556 SMART uim 43 62 IPR003903 -
Seca9g02461 556 SMART uim 138 157 IPR003903 -
Seca9g02461 556 Coils Coil 111 145 - -
Seca9g02461 556 MobiDBLite consensus disorder prediction 473 502 - -
Seca9g02461 556 Gene3D Cysteine Rich Protein 173 236 - -
Seca9g02461 556 FunFam Protein DA1-related 1 173 232 - -
Seca9g02461 556 Pfam LIM domain 179 234 IPR001781 -
Seca9g02461 556 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 204 - -
Seca9g02461 556 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 138 157 IPR003903 -
Seca9g02461 556 Pfam Protein DA1 328 551 IPR022087 -
Seca9g02461 556 CDD LIM_DA1 179 231 - -
Seca9g02461 556 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 260 - -
Seca9g02461 556 ProSiteProfiles LIM domain profile. 177 237 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02461 Seca-Chr9 37771071 37778704 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca9g02461 DA1-like 1.9e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02461 - - gmx:100817969 971.074