Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02456 ATGAGGATCAAACGCACCTTGAAACAGTACTCCGTTCTGATTGAAGGTTTTGTTGGGAGCAAACGGTTTGATGATGTCAGAATTTTAGTGAATGAAATGCAAGTTGATGGAATATTGCCTAGTCGAGCCATGAGTTTGTCATTGCAACAAATGCAGGAGGAAGGATTTCTTAAGGAGATGGATGAATTGTTTAGAGAAATTTCGCCAGATGAAAGAATCAAGAATGTAAGGTATTCTATTGATAGCAGTGATGGGGATGAGGATGAGGATAAGGAAGAGGGTGAGGATGAAAACCATGCTTGTCAAGGTGACCATATTGATGAGATCCACTTAAAACCGTGGCTGGACCCAATGGCTTTGGCTAATGCCTTACAGAATTGGAATCCTGATGAGGTATCAGCACTAGAGGGTGCAAACTTTGTGTGGACAACTAGGTTGGTCTGCAAGATACTTAGAAATTTCAAGTCACCAGAAACTGCCTGGAATTTCTTCTGCTGGGTTGCTTATCAACCTGGATTCACTCATAACATATACACAGTACAAAGAATCATGACCCTTCTATCACGCCATGGGCGTACTGAATTGGTTGATAAACTCATCTCCAAGATCAGAATGGAGGGAATGAGACTACCATTCAGCACCATCAGGCTAATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTGAAGGTTTTCAATGAGGATAGAACACTTTGTGGGCACATATCAAAATTTAATATGATGCTTCTGTATTCCTCTCTTCTAAGAACATTAACCAAGTGTGGAAGGAATTCTGATGCACTGGATATGCTTGATGAGATGATTTTAAATGGTATTTGCCCAGATATTCAAACATTTTCAGGTCTAATGCAATATTTTTCACACCTTGGAGACATTAAAACCGTGCAGAAACTCTTTGGAATGGTCAGGCAGAGCGGTTTAGAGCCAGATGCTTATCTGTATAAGGTACTTATCGAAGGTTATTGCAAGTCAAAAAGAGCTGCACTGGCATGGAGGCTATTTGAAGACATGAAGAATTCAGGTTTGGTGCCTGACTCTGCTATCAAAGAGTTGCTAGTGAAGAGCCTTTGGAAAGAAGGGAGACGGAGAGAGGCTGCAGCAGTGGAAGAGAGCTGTGAGGAAATAGGTGCGGTCCTTCCACTTGCATTACGTGGTCATATATGGACTGTCAGCTCTGCAGATCTCACAAGAGCCAATGACAATGTTCCCCTTGTAAGTTCCAAGTTTGGTGCATCATCAGTGGACATATTGGCTGAAAACAACTATGGTCAAAACTTCACCACTGCAACCAACCTTCCAGTTTTGATCCCAGTGACAAGGTTGCCAGATCTTACTCAACCTATTTCAAATGGAGGAAAAAGCAGGATTCATCTTCCGGTTATAATTGGTATTAGCCTTGGATGCACACTTCTGATTGCAGTTTTAACTTTATCACTGGTATATGTATATTGTCTGAGAATGAAGGCTAGGAATATCAGTGTTTCCTCAGCTGAGAATGCAGATAAGCTACTTTCAGGAGTTTCAGGGTATGTAAGCAAGCCAACCGTGTATGAAATTGATGCAATCATGGAAGGTACCATGAACCTCAGTGACCAGTGCAAGATTGGGGAATCAGTATACAAGGCCAAGATAGATGGTCGGATTTTAGCAGTGAAAAAAGTCAAGGAAGCATCTGAGGAGCTGAAAATTCTGCAGAAGGTAAATCATGGAAATCTGGTGAAATTAATGGGTGTGTCTTCAGATAATGATGGAAACTGTTTCTTGGTTTATGAATATGCTGAAAATGGGTCTCTGGATGAGTGGCTATTCTCCAAGTCTTCAGGAACCTCAAACTCCATGGTCTCTCTTACATGGTCTCAGAGGATTAGCATAGCAATGGATGTTGCTGTGGGTCTACAATACATGCATGAACATACTTATCCAAGAATAGTTCACAGGGACATCACAACAAGTAATATCCTTCTTGACTCAAACTTTAAGGCCAAGATAGCAAATTTCTGTATGGCCAGAACTTCAACCAACCCTATGATGCCAAAAATTGATGTCTTTGCTTTTGGGGTGGTTCTGATAGAGTTGCTCAGTGGAAGGAAAGCCATAACAACAAAAGAAAATGGTGAGGTGGTTATGCTGTGGAAAGATGTTTGGAAGATCTTTGATACAGAAGAGAATAGAGAGGAGAGTCTCCGAAAATGGATGGATCCTAAGTTAGAGAGCTTTTATCCAATAGATAATGCTATCAGCTTGGCCTCTTTGGCAGTGAATTGCACTGCAGAGAAATCTTTATCCAGACCAAGCATGGCAGAAATTGTTCTTAGCCTCTCTTTTCTCACCACTCAACCATCTTACCCAACATTAGAGAGATCCTTGACTTCTGGGTTAGATGTAGAAGATACTCAAATTGTCACTTCCATAGCTGCACGTTGA 2454 0.412 MRIKRTLKQYSVLIEGFVGSKRFDDVRILVNEMQVDGILPSRAMSLSLQQMQEEGFLKEMDELFREISPDERIKNVRYSIDSSDGDEDEDKEEGEDENHACQGDHIDEIHLKPWLDPMALANALQNWNPDEVSALEGANFVWTTRLVCKILRNFKSPETAWNFFCWVAYQPGFTHNIYTVQRIMTLLSRHGRTELVDKLISKIRMEGMRLPFSTIRLIIDFYGISKNADAALKVFNEDRTLCGHISKFNMMLLYSSLLRTLTKCGRNSDALDMLDEMILNGICPDIQTFSGLMQYFSHLGDIKTVQKLFGMVRQSGLEPDAYLYKVLIEGYCKSKRAALAWRLFEDMKNSGLVPDSAIKELLVKSLWKEGRRREAAAVEESCEEIGAVLPLALRGHIWTVSSADLTRANDNVPLVSSKFGASSVDILAENNYGQNFTTATNLPVLIPVTRLPDLTQPISNGGKSRIHLPVIIGISLGCTLLIAVLTLSLVYVYCLRMKARNISVSSAENADKLLSGVSGYVSKPTVYEIDAIMEGTMNLSDQCKIGESVYKAKIDGRILAVKKVKEASEELKILQKVNHGNLVKLMGVSSDNDGNCFLVYEYAENGSLDEWLFSKSSGTSNSMVSLTWSQRISIAMDVAVGLQYMHEHTYPRIVHRDITTSNILLDSNFKAKIANFCMARTSTNPMMPKIDVFAFGVVLIELLSGRKAITTKENGEVVMLWKDVWKIFDTEENREESLRKWMDPKLESFYPIDNAISLASLAVNCTAEKSLSRPSMAEIVLSLSFLTTQPSYPTLERSLTSGLDVEDTQIVTSIAAR. 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02456 817 Pfam PPR repeat family 319 356 IPR002885 -
Seca9g02456 817 Pfam PPR repeat 254 282 IPR002885 -
Seca9g02456 817 Pfam PPR repeat 10 38 IPR002885 -
Seca9g02456 817 NCBIfam pentatricopeptide repeat 254 286 IPR002885 -
Seca9g02456 817 NCBIfam pentatricopeptide repeat 323 356 IPR002885 -
Seca9g02456 817 ProSitePatterns Tyrosine protein kinases specific active-site signature. 653 665 IPR008266 GO:0004672|GO:0006468
Seca9g02456 817 Gene3D Transferase(Phosphotransferase) domain 1 603 684 - -
Seca9g02456 817 PANTHER OS01G0167750 PROTEIN 1 408 IPR044175 -
Seca9g02456 817 MobiDBLite consensus disorder prediction 78 100 - -
Seca9g02456 817 SUPERFAMILY Protein kinase-like (PK-like) 543 786 IPR011009 -
Seca9g02456 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Seca9g02456 817 ProSiteProfiles Protein kinase domain profile. 507 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02456 817 Gene3D Phosphorylase Kinase; domain 1 515 602 - -
Seca9g02456 817 Gene3D Transferase(Phosphotransferase) domain 1 685 796 - -
Seca9g02456 817 Gene3D Tetratricopeptide repeat domain 249 394 IPR011990 GO:0005515
Seca9g02456 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Seca9g02456 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 6 40 IPR002885 -
Seca9g02456 817 Gene3D Tetratricopeptide repeat domain 135 248 IPR011990 GO:0005515
Seca9g02456 817 Pfam Protein tyrosine and serine/threonine kinase 563 682 IPR001245 GO:0004672|GO:0006468
Seca9g02456 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02456 Seca-Chr9 37704839 37709587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02456 407 786 Receptor kinase-like Gene Family AT3G21630 32.794 3.53e-54 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca9g02456 PK_Tyr_Ser-Thr 6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02456 - - cam:101514749 661.759