Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02455 ATGTCTCTCTTTCCTCTCATCACTGTCTTCATTTTCACCTTATTGATCTCCCACTTCTCTGTCATTCAAGGTCAGCAACCTTATATTGGTCAAGCCACAGTAGCCTGTCCTCGAAGGGGTGATTCAAATTCTATGCGTGGTTACATTTGTAATGGCGCAAATCACACCTGCCAAACTTACCTTACCTTCAGATCTCAACCTATTTACAGCTCAGTTCACACAATTTCTGCTCTCTTGGGTTCTGACCCATCTCAGCTTGCTGAAATAAATTCAGTTTCCCTGAATGACACCTTTGACACAAACAAGTTAGTACTTGTTCCTGTCAACTGTTCTTGTGCAGGTCAATATTATCAGGCAAACACATCCTATGTGTTCCAGAACACAGACACCTACTTTTTGATTGCTAACAACACTTTTGAGGGCCTCTCATCTTGTCAAGCATTGATGCATGAAAACCACAATCCTGGTGATATATACCCTGGTAGAAAACTCATTGTCCCTCTTAGATGTGCTTGTCCTACAAAGAATCAAACTGAGAAAGGCATCAAGTACCTCTTAAGTTACTTGGTAGACTGGGGTGATTCTGTCTCATTCATTAGTAACAGATTTGGTGTCAAAACTAAGACCACTCTTGAAGCTAATACCCTTTCCTTGACATCCATTATCTACCCTTTTACCACACTTCTAGTTCCCCTTCATGATAAACCATCAAGTTCTCAAATTGTTTCACCACCTCAACCCTCTCCCTCATCCCCCTCTTCCTCTTCCACAGATCAAAGCTCAAACAAAACATGGGTGTATGTAGTTGTTGGAGTACTTGGAGGAGTTCTTGCCTTAACATTAATTCTCTCTGCTGTCATGTTCTTCACACGCTATAACAAAAATAAAAAGAAAGATGATTCACTGATTGTGTCTAAGAGTTTTGAGGCAGTAGAGAAACCACCACCACAAGAGAAGGAAAATGAAAAATTGCAAGAGATCATATCAGGCATAGCTCAGTCTTTCAAAGTGTATGGTTTTGAGGAAATAAAGCTTGCAACAGATAATTTTAGTCCAAGTTGTTGGATTAAAGGATCTGTTTTTCGTGGTGTGATTAATGGAGATTTGGCTGCAATTAAGAAAACAGAAGGAGATGTGTCAAAGGAGATACAAATACTGAACAAAGTCAACCATTCTAATGTTATACGCCTCTCTGGGGTTAGCTTCGACCAGGGCCAATGGTACCTTGTTTATGAGTATGCTGCTAATGGAGCATTGAGTGATTGGATCTATTTCAATAACGTGGATGGCAAGTTTCTGAGTTGGACTCAGAGGATTCAGATTGCATTTGATGTGGCCACAGGAGTTGACTATCTTCATAGTTTCACTTCTCCTCCTCATATCCACAAGGATTTGAAAAATAGTAACATTCTTTTGGATAGTGATTTCAGGGCAAAGGTTGCAAATTTAAGCCTTGCCAGGTCTGTGGAAGGAGTGGATGATCAATTTCTTGCAACAAGGCATATTGTTGGAACAAGAGGTTACATGGCTCCTGAGTATTTGGAAAATGGTCTTGTTTCTACAAAGCTTGATGTCTATGCATTTGGGGTGATGATGCTTGAAATCCTCACTGGAAAAGAGGTTGCTGCTATTTTAACAGAAGATAATCCGAATTTGGAAGATGTTTTGAGTACCATACTTGGTGAGAAAGGTGGCCAGGAGAGGTTGAAGGAGTTTATGGATCCCTCTCTACAAGGAAATTATCCATTAGAACTTGCTATGTTTGTGGTTGAAATGATTGATAATTGCATAAAGAAAGATCCAGCAAGTCGCCCTGCCATGCATGAGATCGTGCCATCTCTGTCAATAACACTGAACTCTTCATTGAGTTGGGAAAAGTCAGTGAAAATCTAA 1893 0.4015 MSLFPLITVFIFTLLISHFSVIQGQQPYIGQATVACPRRGDSNSMRGYICNGANHTCQTYLTFRSQPIYSSVHTISALLGSDPSQLAEINSVSLNDTFDTNKLVLVPVNCSCAGQYYQANTSYVFQNTDTYFLIANNTFEGLSSCQALMHENHNPGDIYPGRKLIVPLRCACPTKNQTEKGIKYLLSYLVDWGDSVSFISNRFGVKTKTTLEANTLSLTSIIYPFTTLLVPLHDKPSSSQIVSPPQPSPSSPSSSSTDQSSNKTWVYVVVGVLGGVLALTLILSAVMFFTRYNKNKKKDDSLIVSKSFEAVEKPPPQEKENEKLQEIISGIAQSFKVYGFEEIKLATDNFSPSCWIKGSVFRGVINGDLAAIKKTEGDVSKEIQILNKVNHSNVIRLSGVSFDQGQWYLVYEYAANGALSDWIYFNNVDGKFLSWTQRIQIAFDVATGVDYLHSFTSPPHIHKDLKNSNILLDSDFRAKVANLSLARSVEGVDDQFLATRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVMMLEILTGKEVAAILTEDNPNLEDVLSTILGEKGGQERLKEFMDPSLQGNYPLELAMFVVEMIDNCIKKDPASRPAMHEIVPSLSITLNSSLSWEKSVKI. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02455 630 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 627 - -
Seca9g02455 630 Pfam LysM domain 192 231 IPR018392 -
Seca9g02455 630 CDD LysM 187 230 IPR018392 -
Seca9g02455 630 SMART serkin_6 355 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02455 630 SMART LysM_2 122 167 IPR018392 -
Seca9g02455 630 SMART LysM_2 187 231 IPR018392 -
Seca9g02455 630 FunFam PTI1-like tyrosine-protein kinase 3 414 628 - -
Seca9g02455 630 MobiDBLite consensus disorder prediction 236 260 - -
Seca9g02455 630 Gene3D Phosphorylase Kinase; domain 1 318 413 - -
Seca9g02455 630 ProSiteProfiles Protein kinase domain profile. 297 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02455 630 SUPERFAMILY Protein kinase-like (PK-like) 333 614 IPR011009 -
Seca9g02455 630 ProSiteProfiles LysM domain profile. 186 230 IPR018392 -
Seca9g02455 630 Gene3D Transferase(Phosphotransferase) domain 1 415 626 - -
Seca9g02455 630 Pfam Protein kinase domain 373 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02455 630 Gene3D LysM domain 186 243 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02455 Seca-Chr9 37697071 37698963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02455 14 627 Receptor kinase-like Gene Family AT2G23770 43.520 1.06e-170 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca9g02455 Pkinase 3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02455 - - gmx:100815842 944.495