Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02436 ATGAACCATCAACCTATCCAAGACCATATGATGCTCATCTCTCAGTTATACCCTGCTGGTGCATACACTCAAATAATTTCTCAACAAGGGGAGAAGAAGCCAAGACGGCGTCGTAACAAGAAGAGCAAAGGAGGAGAAAACGGGGGCTTGGAAGGTCACAAGAAGAGGAAGCTGAGTATAGAGCAAGTTAATTTACTTGAACAAAATTTTGGAAATGAACACAAACTTGAGTCTGAGAGGAAGGACAGGCTCGCAATGGAGCTTGGTTTGGATCCCCGTCAAGTTGCCGTGTGGTTTCAAAACAGAAGAGCTCGTTGGAAGAACAAAAAATTGGAAGAAGAGTACTCCATCCTTAAAAAATCCCACGAAACCACCTTGCTCGAAAAATGTCGCCTGGAAACTGAGGTATTTTATTTACAACTACAAGTGTTGAAGCTGAAGGAGCAACTCTCAGAGGCAGAGAAGGAGATTCAGCGGCTGCTAGAGCGTGGTGGTGATGTAGTCCCAAGCAACAGCTGCAGTTCATCACAGTCACAGTCGCAATCAATGGAAGCGGTGGACCCACCATTTCTTGGAGAATTTGGGGTTGATGGATATGATGATGATGTGTTTTACGTGCCTGAGACCCATTACATCAATGGCATGGAATGGATTAATCTGTACATGTAA 669 0.4439 MNHQPIQDHMMLISQLYPAGAYTQIISQQGEKKPRRRRNKKSKGGENGGLEGHKKRKLSIEQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSILKKSHETTLLEKCRLETEVFYLQLQVLKLKEQLSEAEKEIQRLLERGGDVVPSNSCSSSQSQSQSMEAVDPPFLGEFGVDGYDDDVFYVPETHYINGMEWINLYM. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02436 222 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Seca9g02436 222 Coils Coil 101 121 - -
Seca9g02436 222 Pfam Homeodomain 55 108 IPR001356 GO:0003677
Seca9g02436 222 MobiDBLite consensus disorder prediction 27 54 - -
Seca9g02436 222 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
Seca9g02436 222 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Seca9g02436 222 CDD homeodomain 54 110 IPR001356 GO:0003677
Seca9g02436 222 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Seca9g02436 222 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
Seca9g02436 222 Coils Coil 143 163 - -
Seca9g02436 222 SUPERFAMILY Homeodomain-like 53 118 IPR009057 -
Seca9g02436 222 SMART HOX_1 52 113 IPR001356 GO:0003677
Seca9g02436 222 Gene3D - 45 118 - -
Seca9g02436 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 175 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02436 Seca-Chr9 37449613 37451396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02436 1 222 Homeobox Transcription Factor Family AT4G36740 56.332 1.92e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca9g02436 Homeodomain 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02436 K09338 - gmx:100809616 310.842