LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g02435	ATGGCACATGAATGTCCACACGTCTTAGACAGAGGCAGTAAGCTCCTCTTCCATCTCTCACTCGCTAATGGGTCCTCATCAGAGGAACCCAGGCTAAGTGACCGCGTTTTCGATGATGGTTTCGTCTTTGATATTGATCGTTCCTTGCTACTCGACCCTCGTAAACTAATCATTGGTGATGTCATTGGAGAAGGCGCTTACTCCATTGTACACACAGGATGGTATGGATGTCGTCCTGTTGCTATAAAGATTATACTCCCAGAAAGAACAGTGAATGCTACACCAGAATGCAAGGCAAAATTTCAGCGGGAGGTGAACTTGATATCTAAGATGCAACATGAAAATATTGTGAAGTTTATTGGCGCCTGTGTGGAACCATCGATGATGATAGTCACAGAACTTTTGGAAAGTGGCTCACTTCAGAAAAATTTAAAGAGCATCTATCCTTGGACTCTTGGTTTGGAACAATCTTTAAGCTTTGCTCTGGATATTTCTCAAGCAATGGAGTATTTGCATGCAAATGGCATTATTCACCGTGATTTGAAGCCTGGTAATTTACTGCTTACAAAGGACAAGATGCATGTTAAACTTGCTGATTTTGGTTTAGCTAGAGAAGATATATGTGATGAGATGACTTGTGAGGCTGGTAGTTACCGATATATGGCTCCTGAGTTATTCAACAAAGATCCACTTCCAAAAGGAACAAAGAAATTCTATGATCGCAAGGCGGATGTCTATAGCTTCGCAATGGTTCTGTGGTCAATAATCAAAAACCAAACTCCATTTAAAGAAAGGAAAGACTTGATGGCTGCATATGCTGCAGTAAACCAGAACTTGAGGCCAAGTGTGGATGAGTTTCCAACACCTGTACTTCCCCTGCTGCAGTCCTGCTGGGCAGAGGACCCAAAACTCCGACCAGAATTCACAGAGATCACTGAAACTCTAGCAGAGCTTCTCCAGAATTTTTGGCCACCAAGGACTACACTTTCCAGCATAACTGAGATTGAAGAAATTGAAAGCAGTGACGATGAAGAAATTCCAAAGGCACATGAATCAAGCCTGGACTCTGGGGAGGAAAACAATATTCCCAAACATCATGATGATGATTATGGGACTAGAAAACCCAATGGTGGAACAGAGAGTGAGTCTCATTCTCAGAGTAGAAGAGCACAGACCCCTTTACCTGCGTCAACCGAAGGCAAGCCAAAAAAGAAAAGCAAGTTCAGGTTTTTATTGTCGTGTTTCCGCAGTTGCCATGCCTTTTGA	1266	0.4273	MAHECPHVLDRGSKLLFHLSLANGSSSEEPRLSDRVFDDGFVFDIDRSLLLDPRKLIIGDVIGEGAYSIVHTGWYGCRPVAIKIILPERTVNATPECKAKFQREVNLISKMQHENIVKFIGACVEPSMMIVTELLESGSLQKNLKSIYPWTLGLEQSLSFALDISQAMEYLHANGIIHRDLKPGNLLLTKDKMHVKLADFGLAREDICDEMTCEAGSYRYMAPELFNKDPLPKGTKKFYDRKADVYSFAMVLWSIIKNQTPFKERKDLMAAYAAVNQNLRPSVDEFPTPVLPLLQSCWAEDPKLRPEFTEITETLAELLQNFWPPRTTLSSITEIEEIESSDDEEIPKAHESSLDSGEENNIPKHHDDDYGTRKPNGGTESESHSQSRRAQTPLPASTEGKPKKKSKFRFLLSCFRSCHAF.	422

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca9g02435	421	MobiDBLite	consensus disorder prediction	337	404	-	-
Seca9g02435	421	Gene3D	Phosphorylase Kinase; domain 1	44	136	-	-
Seca9g02435	421	MobiDBLite	consensus disorder prediction	343	375	-	-
Seca9g02435	421	ProSiteProfiles	Protein kinase domain profile.	56	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca9g02435	421	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	52	319	-	-
Seca9g02435	421	ProSitePatterns	Protein kinases ATP-binding region signature.	62	83	IPR017441	GO:0005524
Seca9g02435	421	SMART	serkin_6	56	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca9g02435	421	Gene3D	Transferase(Phosphotransferase) domain 1	137	357	-	-
Seca9g02435	421	PRINTS	Tyrosine kinase catalytic domain signature	170	188	IPR001245	GO:0004672\|GO:0006468
Seca9g02435	421	PRINTS	Tyrosine kinase catalytic domain signature	286	308	IPR001245	GO:0004672\|GO:0006468

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g02435	Seca-Chr9	37442214	37446392	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g02435	38	322	MAP Kinase Kinase Kinase	AT5G66710	55.944	1.24e-109	327

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Seca9g02435		PK_Tyr_Ser-Thr	1.9e-52	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g02435	-		K04427	gsj:114390113	417.542

Showing 1 to 1 of 1 entries

Previous1Next