LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g02434	ATGGGAACTGGAGAAGAAAGCACAACTAAACCTTCTAAACCATCTTCAACTTCTGCGGCTCAGATACCACTGGCACCTTCATATCCTGACTGGTCAAGCTCCATGCAGGCTTATTATGCTCCTGGAGTCACTCCGCCTCCTTTCTTTGCCTCTACTGTTGCTTCCCCAACTCCTCATCCCTATTTGTGGGGAAGCCAACATCCTCTCATTCCACCATACGGTACTCCTGTTCCATATCCAGCTATATATCCTCCCGGGAGTGTCTATGCTCATCCTAGCATGGCAACGACTCCAAGCACCACACAGCCTGGCACAGAATTTGTAGGCAAGGGTCCTGATGGAAAAGATCGGGTTTCTCCCAAAAATTCAAAGGGAGTATCTGCAAATACTGGTTCTAAAGCAGGAGACAATGGAAATGCAGGCTCGGCGTCAGGAAATGATGGCATCTCACAAAGTGCTGAAAGTGGTTCAGAGGGATCATCAGATGATGCTAATGATGAAAATACTAACCAACAGGAATCAGCTACAAACAAGAAGGGGAGCTTTGACCAAATGCTTGTTGATGGAGCCAATGCACAGAACAATTCTGTTGGTGGCATTGCTCAGTCAACTGTACCTGGAAAGCCTGTTGGGTCAATGTCTGCAACTAATCTTAATATTGGAATGGACTTGTGGAATGCGTCTTCTGGTAGTGCTGAAGCTGCAAAAATGAGGCACAATCCATCTGCTGCTTCAGGAGCTGTTACTCCTTCAACCATAATGGGACGTGAAGTCGCACTTGGTGAACAGTGGATACAAGACGAACGTGAGTTGAAAAGACAGAAGAGGAAACAATCTAATAGAGAGTCAGCTAGGAGGTCAAGACTTCGCAAGCAGGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAGTCGTTGGGAAATGAGAATCAAACTTTAAGAGAAGAGCTGAGGAAAGTATCCGAAGAATGCGAGAAGCTTTCATCTGAAAATAATTCTATCAAGGAAGAGTTGAAACGGTTGTGTGGGCCAGAAGCAGTTGCTAACCTTGAATAA	1053	0.4568	MGTGEESTTKPSKPSSTSAAQIPLAPSYPDWSSSMQAYYAPGVTPPPFFASTVASPTPHPYLWGSQHPLIPPYGTPVPYPAIYPPGSVYAHPSMATTPSTTQPGTEFVGKGPDGKDRVSPKNSKGVSANTGSKAGDNGNAGSASGNDGISQSAESGSEGSSDDANDENTNQQESATNKKGSFDQMLVDGANAQNNSVGGIAQSTVPGKPVGSMSATNLNIGMDLWNASSGSAEAAKMRHNPSAASGAVTPSTIMGREVALGEQWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRVESLGNENQTLREELRKVSEECEKLSSENNSIKEELKRLCGPEAVANLE.	351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g02434	350	SUPERFAMILY	Leucine zipper domain	271	327	IPR046347	GO:0003700\|GO:0006355
	Seca9g02434	350	CDD	bZIP_plant_GBF1	273	323	IPR045314	GO:0003700\|GO:0006355
	Seca9g02434	350	PANTHER	G-BOX-BINDING FACTOR 3-RELATED	1	345	IPR044827	GO:0003700\|GO:0006355\|GO:0043565
	Seca9g02434	350	MobiDBLite	consensus disorder prediction	48	209	-	-
	Seca9g02434	350	Pfam	bZIP transcription factor	268	330	IPR004827	GO:0003700\|GO:0006355
	Seca9g02434	350	Coils	Coil	281	336	-	-
	Seca9g02434	350	MobiDBLite	consensus disorder prediction	1	26	-	-
	Seca9g02434	350	Gene3D	-	271	326	-	-
	Seca9g02434	350	MobiDBLite	consensus disorder prediction	71	85	-	-
	Seca9g02434	350	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	270	333	IPR004827	GO:0003700\|GO:0006355
	Seca9g02434	350	Pfam	G-box binding protein MFMR	1	94	IPR012900	-
	Seca9g02434	350	SMART	brlzneu	268	332	IPR004827	GO:0003700\|GO:0006355
	Seca9g02434	350	MobiDBLite	consensus disorder prediction	122	209	-	-
	Seca9g02434	350	MobiDBLite	consensus disorder prediction	269	294	-	-
	Seca9g02434	350	FunFam	BZIP transcription factor	270	321	-	-
	Seca9g02434	350	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	275	290	IPR004827	GO:0003700\|GO:0006355
	Seca9g02434	350	MobiDBLite	consensus disorder prediction	92	106	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g02434	Seca-Chr9	37432346	37437966	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g02434	1	350	bZIP Transcription Factor Family	AT4G36730	53.125	4.77e-108	317

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Seca9g02434		MFMR	1.8e-31	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g02434	K09060		-	gmx:100808533	542.732