Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02429 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAGGCCACCACCAAGAAGAAGAGAAATCTTCCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTATGGCCACGAACCGATTCGTGTGTGAAATATGCAACAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTTCATCGACGGGGTCACAATCTGCCATGGAAGCTTAGACAGAGGTCAAGCAATGAGGTGAGGAAGAGGGTGTACGTTTGTCCTGAGCCAACGTGTGTTCATCACGATCCTTCAAGAGCTTTGGGGGATCTAACAGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCAGTTCAATCGGATTGGAAAGCTCACTCCAAGATTTGCGGTACCAGAGAGTACAAATGCGATTGTGGGACTTTGTTTTCAAGGAGGGATAGCTTCATCACACATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCAAGATCTCAGACTCAGCCTGCTTCAAAGGCTAGTCCAGAGTCAGATTCCAAAGTTGTAACTGGCGATTCATCACCTCCTGCTGCGGCTGCGGCTGCGGCGTCACCGCCGCCTCAGGCTCCAGCTCCAGCTCCAACCCCGCCAGTTACTTCTCAGTCAAACAGTGTCGTACCATCTGCTTTGCAGACACAAAATCCAGAGTTACCAGAAATTTCACCAAAACTCATAGAGGAACCGGCAGCCAATACTGCTATGAATGGGAGCTGTATCAGCAGCAGCAGCACTAGCACTAGAACCAGCTCACCTAGCAATAACAATGGTAGTGCTAGCAGCAGTGTATTTGCAAGCTTGTTTGCTTCATCAACTGCATCAGGAACTCTTCAATCTCAAACTCCAGCATTCCCTGACCTAATTACGGCCATGGCACATCCAGCAGACCTCTCGGGGCCTTCATCTTCTGAATCCATTTCTCTGTGCCTCGCCACCAATCACGCGTCATCCATTTTTGGAACAGGAGGGAAGGAGCGCCGCCAGTACGCCCCACCACCGCAGCCAGCTATGTCCGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCAGCTGCAACAAATACCTCACTGCTTTGCAGCTTAGGCATAGTACCATCTTCTGGTTCGTCATCACCAGGTCAGCAAGATAGTTTGCAATGGGGTCAGAGGCCAGTAGAACCAGAGAGTGCCTCAGTTCCTGCAGCGCTTGGACTTGGTCTTCCCTATGACAATGGATCTGGACTGAAGGAGTTGATGATGGGGACTCCCTCCATGTTTGGTCCAAAGCAGACCACTCTTGATTTTCTCGGGTTGGGGATGGCTGCTGGTGGCACCCCTGGTGGAGGCTTATCAGCACTCATCACCTCTATTGGTGGTGGTCTGGATGTTACTGCTGCAGCAGCATCCTTTGGGAGTGGAGAGTTTTCTGGCAAAGATATTGGGAGGAACACTTGA 1563 0.5074 MPVDLDNVSTASGEASVSSSGNQTVPPKATTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQTQPASKASPESDSKVVTGDSSPPAAAAAAASPPPQAPAPAPTPPVTSQSNSVVPSALQTQNPELPEISPKLIEEPAANTAMNGSCISSSSTSTRTSSPSNNNGSASSSVFASLFASSTASGTLQSQTPAFPDLITAMAHPADLSGPSSSESISLCLATNHASSIFGTGGKERRQYAPPPQPAMSATALLQKAAQMGAAATNTSLLCSLGIVPSSGSSSPGQQDSLQWGQRPVEPESASVPAALGLGLPYDNGSGLKELMMGTPSMFGPKQTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVTAAAASFGSGEFSGKDIGRNT. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02429 520 Gene3D Classic Zinc Finger 115 195 - -
Seca9g02429 520 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Seca9g02429 520 MobiDBLite consensus disorder prediction 411 427 - -
Seca9g02429 520 MobiDBLite consensus disorder prediction 411 432 - -
Seca9g02429 520 MobiDBLite consensus disorder prediction 9 30 - -
Seca9g02429 520 MobiDBLite consensus disorder prediction 223 240 - -
Seca9g02429 520 MobiDBLite consensus disorder prediction 274 303 - -
Seca9g02429 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 479 IPR031140 -
Seca9g02429 520 MobiDBLite consensus disorder prediction 241 260 - -
Seca9g02429 520 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Seca9g02429 520 SMART c2h2final6 61 83 IPR013087 -
Seca9g02429 520 SMART c2h2final6 102 132 IPR013087 -
Seca9g02429 520 SMART c2h2final6 137 157 IPR013087 -
Seca9g02429 520 MobiDBLite consensus disorder prediction 192 260 - -
Seca9g02429 520 FunFam protein indeterminate-domain 12-like 40 108 - -
Seca9g02429 520 Gene3D Classic Zinc Finger 41 106 - -
Seca9g02429 520 MobiDBLite consensus disorder prediction 1 43 - -
Seca9g02429 520 MobiDBLite consensus disorder prediction 192 214 - -
Seca9g02429 520 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Seca9g02429 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Seca9g02429 520 MobiDBLite consensus disorder prediction 276 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02429 Seca-Chr9 37372483 37375770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02429 1 520 IDZ Gene Family AT5G66730 61.410 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g02429 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02429 K25869 - gmx:100806404 782.326