LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g02429	ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAGGCCACCACCAAGAAGAAGAGAAATCTTCCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTATGGCCACGAACCGATTCGTGTGTGAAATATGCAACAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTTCATCGACGGGGTCACAATCTGCCATGGAAGCTTAGACAGAGGTCAAGCAATGAGGTGAGGAAGAGGGTGTACGTTTGTCCTGAGCCAACGTGTGTTCATCACGATCCTTCAAGAGCTTTGGGGGATCTAACAGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCAGTTCAATCGGATTGGAAAGCTCACTCCAAGATTTGCGGTACCAGAGAGTACAAATGCGATTGTGGGACTTTGTTTTCAAGGAGGGATAGCTTCATCACACATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCAAGATCTCAGACTCAGCCTGCTTCAAAGGCTAGTCCAGAGTCAGATTCCAAAGTTGTAACTGGCGATTCATCACCTCCTGCTGCGGCTGCGGCTGCGGCGTCACCGCCGCCTCAGGCTCCAGCTCCAGCTCCAACCCCGCCAGTTACTTCTCAGTCAAACAGTGTCGTACCATCTGCTTTGCAGACACAAAATCCAGAGTTACCAGAAATTTCACCAAAACTCATAGAGGAACCGGCAGCCAATACTGCTATGAATGGGAGCTGTATCAGCAGCAGCAGCACTAGCACTAGAACCAGCTCACCTAGCAATAACAATGGTAGTGCTAGCAGCAGTGTATTTGCAAGCTTGTTTGCTTCATCAACTGCATCAGGAACTCTTCAATCTCAAACTCCAGCATTCCCTGACCTAATTACGGCCATGGCACATCCAGCAGACCTCTCGGGGCCTTCATCTTCTGAATCCATTTCTCTGTGCCTCGCCACCAATCACGCGTCATCCATTTTTGGAACAGGAGGGAAGGAGCGCCGCCAGTACGCCCCACCACCGCAGCCAGCTATGTCCGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCAGCTGCAACAAATACCTCACTGCTTTGCAGCTTAGGCATAGTACCATCTTCTGGTTCGTCATCACCAGGTCAGCAAGATAGTTTGCAATGGGGTCAGAGGCCAGTAGAACCAGAGAGTGCCTCAGTTCCTGCAGCGCTTGGACTTGGTCTTCCCTATGACAATGGATCTGGACTGAAGGAGTTGATGATGGGGACTCCCTCCATGTTTGGTCCAAAGCAGACCACTCTTGATTTTCTCGGGTTGGGGATGGCTGCTGGTGGCACCCCTGGTGGAGGCTTATCAGCACTCATCACCTCTATTGGTGGTGGTCTGGATGTTACTGCTGCAGCAGCATCCTTTGGGAGTGGAGAGTTTTCTGGCAAAGATATTGGGAGGAACACTTGA	1563	0.5074	MPVDLDNVSTASGEASVSSSGNQTVPPKATTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQTQPASKASPESDSKVVTGDSSPPAAAAAAASPPPQAPAPAPTPPVTSQSNSVVPSALQTQNPELPEISPKLIEEPAANTAMNGSCISSSSTSTRTSSPSNNNGSASSSVFASLFASSTASGTLQSQTPAFPDLITAMAHPADLSGPSSSESISLCLATNHASSIFGTGGKERRQYAPPPQPAMSATALLQKAAQMGAAATNTSLLCSLGIVPSSGSSSPGQQDSLQWGQRPVEPESASVPAALGLGLPYDNGSGLKELMMGTPSMFGPKQTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVTAAAASFGSGEFSGKDIGRNT.	521

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca9g02429	520	Gene3D	Classic Zinc Finger	115	195	-	-
Seca9g02429	520	FunFam	protein indeterminate-domain 5, chloroplastic-like	115	194	-	-
Seca9g02429	520	MobiDBLite	consensus disorder prediction	411	427	-	-
Seca9g02429	520	MobiDBLite	consensus disorder prediction	411	432	-	-
Seca9g02429	520	MobiDBLite	consensus disorder prediction	9	30	-	-
Seca9g02429	520	MobiDBLite	consensus disorder prediction	223	240	-	-
Seca9g02429	520	MobiDBLite	consensus disorder prediction	274	303	-	-
Seca9g02429	520	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	19	479	IPR031140	-
Seca9g02429	520	MobiDBLite	consensus disorder prediction	241	260	-	-
Seca9g02429	520	ProSitePatterns	Zinc finger C2H2 type domain signature.	63	83	IPR013087	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g02429	Seca-Chr9	37372483	37375770	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g02429	1	520	IDZ Gene Family	AT5G66730	61.410	0.0	537

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Seca9g02429		None	None	None

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g02429	K25869		-	gmx:100806404	782.326

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