Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02414 ATGGAAGCCTCAAGGATGTTACTATTCTCCCCAATATCGAGCCCAAATATACGCATGAACCATTTGAATCACTCATCATCAGTTAGAAGGCAAAGGTCTCATGTGGCACTCAAGATAGTGGGCATGGCAAAAGAGGGCAGCGACACTAGCAACAGCAGCATCATAGAGAAAGCAGCCATAGCCGGTGGATTAATCTCAACCCCAGTAATTGCTTGGTCTCTCTACACCCTCAAAACTACCGGCTGTGGCTTGCCCCCAGGTCCAGGTGGGTCAATTGGTGCATTGGAGGGAGTGAGCTACCTCGTAGTTGTGGGAATTGTGGCTTGGTCCTTGTACACTAAAACCAAAACTGGTTCGGGACTTCCTAACGGTCCTTTCGGGTTGTTGGGTGCTGTTGAAGGCCTATCCTACTTGGCATTGGTTGCCATTGTGGTTGTCTTTGGGTTGCAGTACCTTGATCAGGGTTACATTCCAGGTCCTCTCCCAGCTGATCACCCTCCATCACCCAATTCGCAGTCACCTCCTCCTCCAGTGTCTGGATCAGGCCATTCTCCACCCACATCTGGTTCTGGATCACCTTCACCTCCGCACAAATCATTACCAACACAATCATCCTCTGAAAACTCTAATAACAACAATGATGGTAACAACAATGGTGGAGATGATAACAGTAAGGCAATAATTGGAGCAGTGCTTGGTGTAGGCAGTGTTCTTCTCATTTTGGTCATCGTTTGTGTTGTCTGCGCGAGGAAGAAGAAAAAAAAGCAAATGTACTATTATGGTCCTGGAGGCCTTGCTCTTGGCCTCAAAGGGGGTACCTTCAGTTATGAGGAATTGGCAAGTGCCACAGAAGGGTTTACTGATGCCAATTTGATAGGACAGGGTGGCTTTGGTTATGTCCATAAGGGTGTATTGCCTACTGGAAAGGAAGTGGCAGTTAAGAGTTTGAAATCAGGTAGTGGGCAAGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATACTGTATTGCTGGTGGGCAGAGAATGCTGGTCTATGAATTTATTCCCAATAACACTTTAGAATATCACCTTCATGGAAAGGGTAGACCTACCATGGACTGGCCTACTAGAATGCGGATTGCAATAGGCTCTGCTAAAGGGCTTGCCTATCTGCATGAAGACTGCCATCCTCGTATAATTCATCGTGATATTAAAGCTGCGAATGTTCTTATTGATGACAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCAACTCGTGTCATGGGAACTTTCGGGTATCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACTGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTTTTGGAACTCATTACTGGGAAGCGACCAGTGGATGTCTCAAATGCTATGGATGACAGCTTAGTGGACTGGGCCCGACCATTACTAACTCGTGGATTGGAGGAGGATGGCAACTTTGGAGAGTTGGTAGATCTATTTTTGGAGGGAAACTACAATCCTCAAGAATTAACAAGGATGGCGGCATGTGCTGCGGCTAGCATTCGTCATTCCGCCAAGAAGCGTCCTAAAATGAGTCAGATTGTAAGAACATTGGAAGGTGATGTCTCACTAGATGACTTGAAGGAGACGATGAATAAGCCCGGGCATAGCACTATTTACAACTCTTCAGCTGGGAGCTCAGAGTATGATACAATGCAATACAATGCTGATTTGCAAAAGTTCAGAAAAGCAGTATTTTCTAGCCAGGAATTTGGCACCAGCAGCTGCTCTAGTGGCGATATGAGCCAAACCCCGCAGAAACAACCACATTTGCTTTAG 1902 0.4579 MEASRMLLFSPISSPNIRMNHLNHSSSVRRQRSHVALKIVGMAKEGSDTSNSSIIEKAAIAGGLISTPVIAWSLYTLKTTGCGLPPGPGGSIGALEGVSYLVVVGIVAWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLALVAIVVVFGLQYLDQGYIPGPLPADHPPSPNSQSPPPPVSGSGHSPPTSGSGSPSPPHKSLPTQSSSENSNNNNDGNNNGGDDNSKAIIGAVLGVGSVLLILVIVCVVCARKKKKKQMYYYGPGGLALGLKGGTFSYEELASATEGFTDANLIGQGGFGYVHKGVLPTGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCIAGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDVSNAMDDSLVDWARPLLTRGLEEDGNFGELVDLFLEGNYNPQELTRMAACAAASIRHSAKKRPKMSQIVRTLEGDVSLDDLKETMNKPGHSTIYNSSAGSSEYDTMQYNADLQKFRKAVFSSQEFGTSSCSSGDMSQTPQKQPHLL. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02414 633 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Seca9g02414 633 MobiDBLite consensus disorder prediction 160 220 - -
Seca9g02414 633 MobiDBLite consensus disorder prediction 183 220 - -
Seca9g02414 633 FunFam proline-rich receptor-like protein kinase PERK1 264 361 - -
Seca9g02414 633 Gene3D Transferase(Phosphotransferase) domain 1 362 578 - -
Seca9g02414 633 ProSiteProfiles Protein kinase domain profile. 286 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02414 633 SMART serkin_6 286 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02414 633 Pfam Protein tyrosine and serine/threonine kinase 290 496 IPR001245 GO:0004672|GO:0006468
Seca9g02414 633 Gene3D Phosphorylase Kinase; domain 1 252 361 - -
Seca9g02414 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Seca9g02414 633 MobiDBLite consensus disorder prediction 613 633 - -
Seca9g02414 633 SUPERFAMILY Protein kinase-like (PK-like) 273 559 IPR011009 -
Seca9g02414 633 FunFam Proline-rich receptor-like protein kinase PERK1 362 570 - -
Seca9g02414 633 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 233 605 IPR047117 -
Seca9g02414 633 MobiDBLite consensus disorder prediction 160 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02414 Seca-Chr9 37226920 37235115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02414 262 623 Trihelix Transcription Factor Family AT1G70460 60.606 1.63e-148 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca9g02414 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02414 - - gmx:100777163 653.669