Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02410 ATGGAGGCGAATAACAAACTGAAGAACGAAGATCCTGCAGCAGAGTCTCCAACATCGGTTCTAGAAGACGAGGATGTCTGCGGCAAGAACGGGGAAATTAAGTCGGAGGAAGAGGTGCTTGCAGATGTTAGGGATGATGGGTCCTCCTTCATATCAAGTTCAATGGCAGAGGAGGAAGAGAAGTTGCTCGAAGCTCGGATCAAGGAAGAGGAGGCTCAGCGTGAGGATGCACCTGACCTCAATGAGACACAGTTTGACAAACTGGATGAGCTTTTAACGCAAACCAAACTGTACTCTGAGTTTCTTTTGGAGAAAATGGATGACATCACACTTACTGGGGGTGAACAAGAGGATGAGGTTGAGGAAGAGAGCAAACCAGCTGCTAAAAAGAAGGGCCGTGGATCCAAAAGAAAAAAAGCTTCGCAGTGCAATACTGGGAAGGCCAAAAGGGCAGTTGCAGCCATGCTTACAAGATCTAAAGAAAATGAGAGGACTGAAGATATGAACATGAGTGAGGAAGAACGAATGGAGAAAGAACAGAAGGAGCTTATGCCTTTACTGACAGGTGGAAAATTGAAGTCTTATCAACTGAAGGGAGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGGTTTATCTCACATCTAAAAGCGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGCGAATGAGATTTCTAGGTTTGCACCATTACTCCCTGCTGTTATCTACCATGGTAACAAGAAACAGAGGGATGACATCCGAAGGCAACATATGCCTAGAACAATTGGCCCAAAATTTCCCATAGTAATAACTTCTTATGAGGTTGCTTTAAATGATGCTAGGAAAGGATTGAGTTCATACCATTGGAAATATCTTGTTGTTGATGAGGGTCACAGACTCAAAAACTCGAAATGCTTATTGGTGAAGAGATTGAAATACATGAAAGTAGAAAATAAGCTGCTGCTAACTGGGACACCTCTTCAGAATAACTTGGCGGAGCTGTGGTCATTGTTGAACTTCATTTTACCTGATATCTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAATAATGGAGCATCCAAGGAAGAGTTGGAAGAGAAAAGAAGAACCCAAGTAGTAGCAAAGCTTCATGCAATTCTTCGGCCCTTTCTTTTGCGTAGGATGAAGTCTGATGTTGAGCTGATGTTGCCACGGAAAAAGGAGATAATTATCTATGCTAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAATTAATGCAACATTGGGGAAATATTTAACAGAAAAACTGTCTGTTGGTATGTCATCTGTTGCAATAAAAATTCATAATTTGGTCATTCTGCTAAGGAAGGTCTGCAACCATCCTGACCTCTTAGAGTCAGCCTTTGATGGTTCATATTTATATCCTCCTGTAAATGAGATAATTGAACAATGCGGAAAGTTCCATTTGCTTGACCGATTGTTAGAACGGTTATTCGCACGGAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGGATTGATGGTGCAGTGAAACTGGATGAAAGGAAACGGCAGATCCAGGATTTCAATGATGAAAACAGCAATTGCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAAGCCATGGATAGATGCCATAGAATAGGTCAAACAAAGCCTGTTCATGTTTACAGGCTTGCAACTGCTCAATCTGTAGAGGGTCGCATGTTAAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGAGAAAGGACAGTTTCATCAAGAACGTGCAAAGCCTGCCAGTATGGATGAATTGGAGGAAGAGGATATTTTGGCAATGCTTCGAGGAGAAAACGAAACAGATGAAGACAAAATGATACAAATAGGTATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGTGATCTTGTTGTCAATAGCTCAAACGATAATACAAACGTAAAAGCTCCGGAAAGTAGCTTTCCCCTTAAAGGGCCGGGGTGGGAGGTGGTGATTCCATCTTCGACTGGGGGCATGCTTTCTACCCTTAACAGCTAA 2295 0.4187 MEANNKLKNEDPAAESPTSVLEDEDVCGKNGEIKSEEEVLADVRDDGSSFISSSMAEEEEKLLEARIKEEEAQREDAPDLNETQFDKLDELLTQTKLYSEFLLEKMDDITLTGGEQEDEVEEESKPAAKKKGRGSKRKKASQCNTGKAKRAVAAMLTRSKENERTEDMNMSEEERMEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFISHLKAKGLDGPYMIIAPLSTLSNWANEISRFAPLLPAVIYHGNKKQRDDIRRQHMPRTIGPKFPIVITSYEVALNDARKGLSSYHWKYLVVDEGHRLKNSKCLLVKRLKYMKVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCNNGASKEELEEKRRTQVVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEHQKNLQDHLINATLGKYLTEKLSVGMSSVAIKIHNLVILLRKVCNHPDLLESAFDGSYLYPPVNEIIEQCGKFHLLDRLLERLFARNHKVLIFSQWTKVLDIMDYYFSEKGLEVCRIDGAVKLDERKRQIQDFNDENSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERAKPASMDELEEEDILAMLRGENETDEDKMIQIGISDEDLEKLLDRSDLVVNSSNDNTNVKAPESSFPLKGPGWEVVIPSSTGGMLSTLNS. 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02410 764 MobiDBLite consensus disorder prediction 130 144 - -
Seca9g02410 764 Coils Coil 162 182 - -
Seca9g02410 764 MobiDBLite consensus disorder prediction 25 44 - -
Seca9g02410 764 SMART helicmild6 546 630 IPR001650 -
Seca9g02410 764 MobiDBLite consensus disorder prediction 1 61 - -
Seca9g02410 764 Gene3D - 193 423 IPR038718 -
Seca9g02410 764 FunFam ATP-dependent DNA helicase DDM1 186 431 - -
Seca9g02410 764 Pfam SNF2-related domain 195 494 IPR000330 GO:0005524|GO:0140658
Seca9g02410 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 721 IPR027417 -
Seca9g02410 764 Pfam Helicase conserved C-terminal domain 520 630 IPR001650 -
Seca9g02410 764 Gene3D - 428 734 IPR027417 -
Seca9g02410 764 SMART ultradead3 188 383 IPR014001 -
Seca9g02410 764 PANTHER SNF2/RAD54 HELICASE FAMILY 44 702 - -
Seca9g02410 764 MobiDBLite consensus disorder prediction 113 147 - -
Seca9g02410 764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 372 IPR014001 -
Seca9g02410 764 FunFam Chromatin complex subunit A 106 432 661 - -
Seca9g02410 764 Coils Coil 53 75 - -
Seca9g02410 764 CDD SF2_C_SNF 506 640 - -
Seca9g02410 764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 676 IPR001650 -
Seca9g02410 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 422 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02410 Seca-Chr9 37189890 37196013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02410 162 651 RAD5 or RAD16-like Gene Family AT3G16600 24.623 6.87e-34 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca9g02410 SNF2_N 3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02410 K19001 - gmx:100777687 1267.29