Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02394 ATGATGCATCGTTCTTGCAGTGGCTCCCAGGGGCACGTGATGGGACCCTGTACATGTGGTATGTTTCATACTCATAGCCAAACCAATTCCTTGTCAATGCTATTCTCCATGCCCAACCACAAACCCTATGAATATGATGAATCAGACATGTATTCCTTCACTCCTTCTTCCTCTTCCGTGGACTGCACCCTCTCCCTCGGAACCCCATCCACCCGATTCACCGAAGATGAAGAGAAGCGTAACCGACACGAACGTCGCTCGGTATCAAACTTTTGCTGGGATTTACTACAATCCAAACACACCTCTCAATCACAAACCAAGTCCACAAGAGGAAGCACCAATTCAAACTCAACTAACGATCCTCTCCTCGCTCGTCGCTGCGCCAACTGCGACACCACTTCAACTCCCCTCTGGAGAAACGGCCCACGAGGCCCAAAGTCACTCTGCAATGCCTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCAAGTGCTGCCGCCGCTACACCGCAGATGTATAGCCATAACCACAACAACTCATGGTACGCACAACCGCAGAGTCAGAAGATGCAGTGCTTCTCGCCGGCGATGGGCAATGAGTTCCGGTTCATGGATGACGCCGATCGAGAATCCGAGAACGGCATTCCGTTTCTGTCTTGGAGACGAACAAGCCTCGTTCATGACTATACCAGATGA 696 0.5072 MMHRSCSGSQGHVMGPCTCGMFHTHSQTNSLSMLFSMPNHKPYEYDESDMYSFTPSSSSVDCTLSLGTPSTRFTEDEEKRNRHERRSVSNFCWDLLQSKHTSQSQTKSTRGSTNSNSTNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATPQMYSHNHNNSWYAQPQSQKMQCFSPAMGNEFRFMDDADRESENGIPFLSWRRTSLVHDYTR. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02394 231 SMART GATA_3 121 170 IPR000679 GO:0006355|GO:0043565
Seca9g02394 231 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Seca9g02394 231 Gene3D - 123 190 IPR013088 GO:0006355|GO:0008270
Seca9g02394 231 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Seca9g02394 231 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Seca9g02394 231 PANTHER GATA TRANSCRIPTION FACTOR 18 11 231 IPR044272 GO:0003700|GO:0009908
Seca9g02394 231 ProSiteProfiles GATA-type zinc finger domain profile. 121 157 IPR000679 GO:0006355|GO:0043565
Seca9g02394 231 MobiDBLite consensus disorder prediction 102 122 - -
Seca9g02394 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02394 Seca-Chr9 37034476 37036103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02394 18 231 C2C2-Gata Transcription Factor Family AT3G50870 44.912 2.00e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca9g02394 GATA 5.4e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02394 - - gmx:100790571 340.502