Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02387 ATGGAAATGAGAGGCCAAGAAAAGGAATTAGAGATGGCAACTACTTTGGGTTATAATCTTCCCAATAGGGATTCTTCATCTTCTTCCAAGCTGTCTTCTGGGCAGAGAGGTGCTAGTAGTGATCAACCTCCTCAACCTCACAGTACTCACACATTAATCTTCAATGATCCACCTCAAACTTCACATCACCAACACCATCATCATCTTTTTCCACCTACTCCTCTTGCACCCCCTCAACATCACCAATCTCAGAGACCAAGTACCACCACAGATCCAGATCTAAGCTCATCTCCTATTACCCCAAGAACAGCACCACAGATAACAACAACAACAACCTCAACCCCTTTGGTCAGATACCGAGAATGTCTGAAGAACCACGCGGCAAGCATGGGGAGCCACGTGGTAGATGGATGTGGTGAATTCATGCCAAGTGGAGAAGAAGGCACCCCAGAATCACTAAAGTGTGCTGCTTGTGAGTGTCACCGCAATTTCCATAGAAAAGAGGTTGAAGGGGAACAACCCCAATTACATAATGTTCCCAATTATCACAGTCACAGCTATTATCCCAATCCCAATAAGCATAATAATGGTCACCTTCAGTTTCCTACACCACCATCCTCTTCTCTTTCTCTACATCACCATAGATTTTCCCATGTGGTTGCTACCCCAACAGCAGGTCCTGTTCCACCCTTGATGATGGCCTTTGGAGGCCCTGCTGAGTCCTCAAGTGAAGATCTAAACATGTTCCAGTGTAACGCGGGAGCACAGTTTTCAGTGCAGGTGCCACCACTTTCCAAGAAGAGGTTCAGGACAAAGTTCTCACAGCAGCAGAAGGATAGGATGATGGAGTTTGCTGAGAAGCTGGGGTGGAAGATCCAGAAACATGATGAACAGGAAGTGCAGCAATTTTGTTCCCAAGTGGGTATCAAGAAACAGGTTTTCAAGGTTTGGATGCACAATAACAAACAAGCAATGAAGAAGCAGCAAAATGTAAGCCTATAG 1002 0.4551 MEMRGQEKELEMATTLGYNLPNRDSSSSSKLSSGQRGASSDQPPQPHSTHTLIFNDPPQTSHHQHHHHLFPPTPLAPPQHHQSQRPSTTTDPDLSSSPITPRTAPQITTTTTSTPLVRYRECLKNHAASMGSHVVDGCGEFMPSGEEGTPESLKCAACECHRNFHRKEVEGEQPQLHNVPNYHSHSYYPNPNKHNNGHLQFPTPPSSSLSLHHHRFSHVVATPTAGPVPPLMMAFGGPAESSSEDLNMFQCNAGAQFSVQVPPLSKKRFRTKFSQQQKDRMMEFAEKLGWKIQKHDEQEVQQFCSQVGIKKQVFKVWMHNNKQAMKKQQNVSL. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02387 333 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 119 168 IPR006456 -
Seca9g02387 333 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 90 323 - -
Seca9g02387 333 ProSiteProfiles 'Homeobox' domain profile. 264 328 IPR001356 GO:0003677
Seca9g02387 333 NCBIfam homeobox domain, ZF-HD class 266 323 IPR006455 -
Seca9g02387 333 MobiDBLite consensus disorder prediction 1 112 - -
Seca9g02387 333 FunFam Zinc-finger homeodomain protein 2 254 327 - -
Seca9g02387 333 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 118 169 IPR006456 -
Seca9g02387 333 MobiDBLite consensus disorder prediction 18 59 - -
Seca9g02387 333 MobiDBLite consensus disorder prediction 80 112 - -
Seca9g02387 333 SUPERFAMILY Homeodomain-like 259 327 IPR009057 -
Seca9g02387 333 Gene3D - 257 327 - -
Seca9g02387 333 Pfam ZF-HD protein dimerisation region 117 169 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02387 Seca-Chr9 36957651 36958652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02387 67 328 ZF-HD Transcription Factor Family AT2G18350 45.878 3.05e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca9g02387 ZF-HD_dimer 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02387 - - vra:106776405 370.933