Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02349 ATGAGATCTTCTGTGGGGAACCTTTCTTCCTCCTTTACAAACATTCGTTCAGCATCATCATGGTTCGAGGTCTATGCTGCTTTCTCCACATTGATGATGCTTCTAAGAACCGCAATCAACGATCTCATACCCCAACAAGCTCGATCTTTCATCATCTCAAAGCTAGGAGCTTTCTTCTCACACTGGGGTCATAATAATCAAGTCTCACTTCAAATTGATCAGTATTGGGATGGCAGTACCAACAAGCTCTTCCAAGCAGCTAAAGAGTATCTCCCAACTCGGATAACCCACACTTACAGATCGCTCAAAGTGGGGAAACTATCAAAGGAGAAGAGTGTTCTAGTGGCTGTGGATAAAGGCCAAGAGGTGGTGGATGAATTTGAAGACATCAAGCTTACATGGAAGCTTGTTGAAAATATCAAAACGGATCGCAGGTCAAAAGAATTTGAGGAGAATTCATTTGTACTAAGCTTTGATGAGAAGCATAGAGAGGAAGTAATGAAGAAGTATATTTCTCATGTTCTGAGTACTTACCAGGCCATGAAAGCAGAACAGAGGACTCTTAAGATCCATTCCATGTCTTGCAAGCATTGGAAACAGAGTGATTTAACACATCCAGCTTCATTCGACACACTTGCCTTGGATCCCGAGCAAAAGAAGGGTATCATTGATGATTTAGATCGGTTTTTGAGGAGGAAAGAGCTTTACAAGAAAGTGGGTAAGCCATGGAAACGTGGTTACCTTTTGTATGGGCCACCAGGAACTGGAAAATCTAGCCTTATTGCAGCTATGGCTAACTACTTGAAATTTGATGTGTATGATTTGGAGTTAAGCTCTGTGTATTCCAATTCAGACCTCATGCGAGCCATGAGGGAGACATCTAACCAATCCATCATCGTGATTGAAGACATAGACTGCAATAAAGAGGTGCTTGTTCGATCACCAACAGAGAAAGTTTCAGACTCTGACTCAGACTCTGACCACCCGCCAGTCAAGGTTATGAGTATGACCAGGGGGTTTACTCTTTCGGGTCTGCTTAACTACATGGATGGGTTGTGGTCAAGCTGTGGAGAAGAGAGAATTATAATATTTACAACAAACCACAGAGATAAAATAGACCCAGCATTGCTGCGCCCTGGTAGAATGGATATGCACATTCACTTGTCCTTCCTTAGAGCCAAGGCATTTCGAATCTTGGCTTACAATTATTTGGGTATTGAAGGACACCACCCACTCTTTGAACAAATTGAAGAGCTATTGGAAAAAGTAGAGGTCACCCCTGCAGTAGTGGCAGAGCATCTGTTGAGAAGTGAGGATCCTGATGTTGCTTTGGAAGGAATCCTTAACTTTCTCAAAGAAAAGGATATGAATAGCCTATTTTCAGATTTATGA 1392 0.4217 MRSSVGNLSSSFTNIRSASSWFEVYAAFSTLMMLLRTAINDLIPQQARSFIISKLGAFFSHWGHNNQVSLQIDQYWDGSTNKLFQAAKEYLPTRITHTYRSLKVGKLSKEKSVLVAVDKGQEVVDEFEDIKLTWKLVENIKTDRRSKEFEENSFVLSFDEKHREEVMKKYISHVLSTYQAMKAEQRTLKIHSMSCKHWKQSDLTHPASFDTLALDPEQKKGIIDDLDRFLRRKELYKKVGKPWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSSVYSNSDLMRAMRETSNQSIIVIEDIDCNKEVLVRSPTEKVSDSDSDSDHPPVKVMSMTRGFTLSGLLNYMDGLWSSCGEERIIIFTTNHRDKIDPALLRPGRMDMHIHLSFLRAKAFRILAYNYLGIEGHHPLFEQIEELLEKVEVTPAVVAEHLLRSEDPDVALEGILNFLKEKDMNSLFSDL. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02349 463 Pfam ATPase family associated with various cellular activities (AAA) 248 388 IPR003959 GO:0005524|GO:0016887
Seca9g02349 463 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Seca9g02349 463 Gene3D - 387 459 - -
Seca9g02349 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 437 IPR027417 -
Seca9g02349 463 Gene3D - 198 386 IPR027417 -
Seca9g02349 463 SMART AAA_5 243 392 IPR003593 GO:0016887
Seca9g02349 463 CDD RecA-like_BCS1 222 388 - -
Seca9g02349 463 Pfam Domain associated at C-terminal with AAA 43 137 IPR025753 -
Seca9g02349 463 PANTHER BCS1 AAA-TYPE ATPASE 26 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02349 Seca-Chr9 36430120 36432455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02349 245 388 Calmodulin-binding Proteins AT3G56690 31.579 1.34e-10 62.0