Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02344 ATGGCGGGTTTATTTTCATTAGGCGGTAGAGGAGGAAGAGGGAGCAACAGCGAAGAGGAGCAACAGAATGCAACGACTGAAATTCCTCCTCCTGATAGCTTATTCTGGTATAACAAGAATGACGACGTCGTTTCCTCTTACCGAGGCTTCGAGCTATGGAATCAGAACCAACAGCAGCAACTCATGTCTCAATCTCAACCGCGCCCTCTCTTCCAGCAAGATCTTTACTCCTCCGCCGCTGCGCTAGGCGTGGGGCCGAGTAGGCCCGCCGATGATCATTCGCCGTCGAGATCCGCGTTCATGATGAGCAGTGGAAGCGGAAGCGGCAGCGGAGGGATCAGCTGTCAGGATTGCGGGAACCAAGCGAAGAAGGATTGCCCTCACATGCGGTGCAGGACTTGCTGCAAGAGCCGTGGATTCGATTGTCAAACTCATGTGAAGAGCACTTGGGTTCCTGCTGCAAGGCGCCGCGAAAGACAACAGCAACAAGTGGCTACTGGTGGTGGTGGTGGAGATGTTCCGAAAAGGCAGAGAGATCATAACCAGAGCTCTTCATCCCTCGCCTGCACTCGTTTGCCTACTACAAACCCCTCACCCTCAGAAGGGTTAGAAGAGGTGAATTTTCCTGCTGTGGTGAACTCTCCGGCGGAGTTTAGGTGCGTACGTGTTAGCTCCGTGGACGAGTCGGAGGAGGAATACGCTTACTCAACGGCGGTGAACATTGGAGGGCATGTGTTCAAAGGAATTCTGTATGACTACGGTCCAGATGGCACGGCTGCTGGTGGTGGTGCCGGAAACAGCTCCTCCACGGGTGCTGCTGAACACCTTCAGCCCTTGAATCTCATTCAAGGTACCCCAGCCACTGCTGTTGGGACAATCGTGGATCCTTCTTCCTTATATCCAGCTCCCCTTAACACCTACATGCCTGCTGTTAGTGGTACGCAATTCTTCCCCCACCCAAGATCTTGA 969 0.5366 MAGLFSLGGRGGRGSNSEEEQQNATTEIPPPDSLFWYNKNDDVVSSYRGFELWNQNQQQQLMSQSQPRPLFQQDLYSSAAALGVGPSRPADDHSPSRSAFMMSSGSGSGSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQVATGGGGGDVPKRQRDHNQSSSSLACTRLPTTNPSPSEGLEEVNFPAVVNSPAEFRCVRVSSVDESEEEYAYSTAVNIGGHVFKGILYDYGPDGTAAGGGAGNSSSTGAAEHLQPLNLIQGTPATAVGTIVDPSSLYPAPLNTYMPAVSGTQFFPHPRS. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02344 322 MobiDBLite consensus disorder prediction 15 29 - -
Seca9g02344 322 Pfam Domain of unknown function (DUF702) 112 256 - -
Seca9g02344 322 MobiDBLite consensus disorder prediction 1 36 - -
Seca9g02344 322 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 305 IPR007818 GO:0003700|GO:0006355
Seca9g02344 322 MobiDBLite consensus disorder prediction 153 204 - -
Seca9g02344 322 NCBIfam LRP1 C-terminal domain 208 255 IPR006511 -
Seca9g02344 322 MobiDBLite consensus disorder prediction 83 106 - -
Seca9g02344 322 MobiDBLite consensus disorder prediction 180 202 - -
Seca9g02344 322 NCBIfam putative zinc finger domain, LRP1 type 114 156 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02344 Seca-Chr9 36357085 36359545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02344 1 311 C2H2 Transcription Factor Family AT5G66350 49.267 1.64e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca9g02344 DUF702 8.9e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02344 - - gmx:100814589 314.309