Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02333 ATGGGTCGTGGGAAGATTGAGATAAAGTTGATTGAGAATCCTACCAACAGGCAAGTCACCTACTCCAAGAGACGCAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGCGATGCTAAGGTCTCTCTTATCATGTTCTCCAAAAACAACAAGATGCACGAATACATCAGCCCTGGCCTTACGACAAAGAAGATCATGGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCATTATGAGAAAATGCTTGATAACTTGAAGAAACTGAAAGATATTAACAATAAACTCAGAAGACAGATCAGGCATAGGATAGGTGAGGGTTTGGATTTGGAGGATCTGAGCTTCCAGCAACTGCGCAATCTTGAAGAGGATATGGTTTCTTCCATAGGGAAAATACGCGAAAGGAAGGTGCGATCTTTCTAA 441 0.424 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIMDQYQKTLGDIDLWRSHYEKMLDNLKKLKDINNKLRRQIRHRIGEGLDLEDLSFQQLRNLEEDMVSSIGKIRERKVRSF. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02333 146 Coils Coil 85 105 - -
Seca9g02333 146 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca9g02333 146 Pfam K-box region 83 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g02333 146 ProSiteProfiles K-box domain profile. 85 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g02333 146 Gene3D - 14 105 IPR036879 GO:0003677|GO:0046983
Seca9g02333 146 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Seca9g02333 146 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Seca9g02333 146 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca9g02333 146 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca9g02333 146 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca9g02333 146 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca9g02333 146 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 141 - -
Seca9g02333 146 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Seca9g02333 146 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02333 Seca-Chr9 36223391 36224386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02333 1 146 MADS-box Gene Family AT3G54340 59.589 1.24e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca9g02333 K-box 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02333 K09264 - gmx:100784496 260.766