Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02323 ATGGAACAACCGCAGCCGGAAACATCTGTGAGCCTTGGAACTCCCGAGTTGGCCGCGGCGGAGCTTTTGAGCCGCGGTGTTAGGGATTTGGAGGAGTCGCGCCTCGTCGGAGTTCCTGTAGCGCACGCTTGCGATGTTGACATGGCTGAGAGAGAAGGTGGTTGCTGCGCGTCCAATTTGGAGGTCGCGGTTGTGGACGGCGCTGTTTTGAAGAGGAAGCGGGGTCGTCCAGCGAAAGGAACTCCGAAAACGACTCCTCCGCCGAGGCAGAAGAAGGACGAGGAGGATGTTTGTTTCATATGCTTTGACGGTGGGAGCCTCGTTCTCTGCGATCGCCGGGGTTGCCCCAAAGCGTATCATCCCTCATGTATTAAGCGAGACGAGGAGTTCTTCCGATCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCACTTGTCAGAGGGCATCCCATTACATGTGCTACACTTGTACGTTTTCTTTGTGCAAGGGATGTACAAAAGATGCTGATTTTGTTTGTGTCCGAGGAAATAAAGGTTTGTGTGGAATATGCATGAGAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGATGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGATGTATTTGAAAGGGAAGCTGTCTTTAACGTTTGATGAACTCCTTAGAGCTAAAAACCCATTTAATGGTGCTGCTCCTATGAGCTGTAAAGTTCAAACTCCCCATGAACTTTATCATCTAAAAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAAAACAAGAAGTCTAAGAGACAACCAAAGCTTCTTAGTAAAGGGGATTGCTTCGATAGGATAACTTCTGCTGGTGACACTGGTGTGTCTTTGCCTGAATGCACGAAATGGGCATCAAAGGAACTTCTAGAGTTTGTTGCACATATGAAAAATGGTGACACATCTCTCCTGTCTCAATTTGATGTCCAGAGTCTCCTGGAGGATTATGTGAAGAAAAATAATCTTCGTGATCCTGAACAGAAGTCCCAAATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGAAAAGCACGTGTTGGCTACATTGAAATGCTAATGCTCCTTGAACCTCACTTTCTCATAAAAGATAATAGCCGTGCAGAAAATGCTTTTGGAGCTGGAATTATTGATGCTGTTGCTAATGAGGGGGAGGCAATTGACAATTACAATAAACAGTTGATGTCAGTTAATGATAAGAGATGTATAACAAGTAAAAAGGCCGATGTGCTAGTGCCACAAAATAATCCAGATGCATATGCTGCTATAAATGCTCACAACATTAACTTGATCTACTTACGGCGAAGTCTGATGGAAAGTTTAATGGATGATACTGAAAAGATTGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTACAGGCTTGTCCAAGTTGTAGGTACAAACAAGGTTGCTGAACCTTACAAAATTGGCACAAACACAACTGATATTAAGCTTGAAATTTTGAACTTAAACAGGAAGGAGGTCATATCCATAGATGAGATTTCGAATCAGGAGTTCTCTGAGGACGAATGCAAGCGTTTGCGTCAGAGTATAAAGTATGGGCTCTCAAAGAGACTGACTGTGGGAGAGATTCTGGACAAAGCATTGACACTTCAAGCAATTAGAGCTAATGATTTGCTGGAAGCGGAAATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCACAGAAAAGAATATCCTTTACCATTTACTACTTTACATTCCGTTGTCAATCCCCCTCCCATTATGCTAAACTAG 1902 0.4295 MEQPQPETSVSLGTPELAAAELLSRGVRDLEESRLVGVPVAHACDVDMAEREGGCCASNLEVAVVDGAVLKRKRGRPAKGTPKTTPPPRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDEEFFRSKAKWNCGWHICSTCQRASHYMCYTCTFSLCKGCTKDADFVCVRGNKGLCGICMRTIMLIENSAQGNKEMCDVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPFNGAAPMSCKVQTPHELYHLKDDKGSGSENSCIDIESNNLKNKKSKRQPKLLSKGDCFDRITSAGDTGVSLPECTKWASKELLEFVAHMKNGDTSLLSQFDVQSLLEDYVKKNNLRDPEQKSQIVCDSRLVNLFGKARVGYIEMLMLLEPHFLIKDNSRAENAFGAGIIDAVANEGEAIDNYNKQLMSVNDKRCITSKKADVLVPQNNPDAYAAINAHNINLIYLRRSLMESLMDDTEKIEKVVGSFVRIRISSGDQKQDMYRLVQVVGTNKVAEPYKIGTNTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILDKALTLQAIRANDLLEAEILRLNHLRDRASEKGHRKEYPLPFTTLHSVVNPPPIMLN. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02323 633 SMART PHD_3 97 143 IPR001965 -
Seca9g02323 633 CDD SWIB-MDM2_like 318 393 - -
Seca9g02323 633 Pfam SWIB/MDM2 domain 320 393 IPR003121 -
Seca9g02323 633 SMART swib_2 315 398 IPR019835 -
Seca9g02323 633 ProSiteProfiles SWIB/MDM2 domain profile. 312 395 IPR003121 -
Seca9g02323 633 Coils Coil 588 608 - -
Seca9g02323 633 Gene3D - 456 584 IPR036128 GO:0003677
Seca9g02323 633 FunFam Zinc finger CCCH domain-containing protein 19 88 187 - -
Seca9g02323 633 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 188 IPR013083 -
Seca9g02323 633 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 61 615 - -
Seca9g02323 633 SMART rtf1 455 564 IPR004343 GO:0003677
Seca9g02323 633 SUPERFAMILY FYVE/PHD zinc finger 92 142 IPR011011 -
Seca9g02323 633 Gene3D SWIB/MDM2 domain 311 402 IPR036885 -
Seca9g02323 633 Pfam Plus-3 domain 460 562 IPR004343 GO:0003677
Seca9g02323 633 SUPERFAMILY SWIB/MDM2 domain 317 394 IPR036885 -
Seca9g02323 633 CDD PHD5_NSD 97 142 - -
Seca9g02323 633 ProSitePatterns Zinc finger PHD-type signature. 98 158 IPR019786 -
Seca9g02323 633 ProSiteProfiles Zinc finger PHD-type profile. 95 161 IPR019787 -
Seca9g02323 633 FunFam Zinc finger CCCH domain-containing protein 19 456 584 - -
Seca9g02323 633 SUPERFAMILY Plus3-like 456 583 IPR036128 GO:0003677
Seca9g02323 633 ProSiteProfiles Plus3 domain profile. 455 587 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02323 Seca-Chr9 36109142 36116796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02323 95 175 PHD Transcription Factor Family AT5G36670 34.940 4.20e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Seca9g02323 Plus-3 9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02323 - - aprc:113869503 1037.33