Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02322 ATGTTCGATTTGTCGGCTGATGATATGCTATGCAAAGAGTTTGGTAGTGAAGAAGAGGCATATGAATTCTATAAGTTGTATGCAAAATATCATGGGTTTGTGGTTAGGAAAGATGATGTAACCAAGGATATTAGGGGTAATATTATAATGCGGCAATTTGTCTGTAATAGGGAGGGTTTGAGGAAGAAGAAGCATTTTATGAGGGTGGATCGGAAGAGAGAACATAGGTCGTTGACTCGTACAAAGTGTAATGCTAAGCTTCGTATACATTACTATCACAAGAGTCAAATTTGGAAAGTAGTGTCCTTGGAGCAGTGCCATAACCATGAACTTACCCCATCAAGATATGTGCACCTACACCCTGCTTACCGTAATTTGTCACATGCTGATAAAGCCCAAGTTAATAGTTTGCATGGTTATGGCATTAGAGGGTGTCACATTATGGGATACCTAGTGGCTCAAAAGGGGGGATATTCTCGTGTTGGCTTTTCAAAGAAGGACATGTACAACTATCTTGATCGAAAAAATCAAGCAAAGGTTAAGAAAAAGGATGTGCGTGCTGCCTTGAGTTACCTTCAAGGGAAGGCTTATAGTGACCCCCTATTATATAAAAGTAGCATTGTTGAATTTCTGCATAAGTTTGAGCAGGCAAAGAAAGAGTATAGAAACAATGAGTTGTTGGCTGACTTTAAGACTTTATTTTCTGAGCCCGTGTTAACCACTTACCTTCATAAGATTGAGAAGCAGGCAGCTAACATTTACACTCAAGAGGTTTTCAAGGAAGTTAAGCAGGAGATTGAAAAGGCAAATGCATTGATTGTATCTGAAAGATCAATTAACGGGGAGAATTTGAATTTCACTTTGAAAAAGTATTGTAGTCCCGGTAAAGAAGTTCATGTTGTTTTTTATACAACACAGATGACCTTTTTGTGTGATTGTAGGTTGTTTGAGTGTCGAGGGATTCCATGTTCCCATATTATATCTGTCTTGAGAAGTGAGGATATGGACCACATCCCAACGTCTTTGATATGCAAACGGTGGTCTAAGACTGCGAGGACTGATTTCTTGTCCTACTATGGGCCAGATGAAATGGATCCTGATGTGGTTGAGGAAGCTTGCTTTTCTGCCATAGCAGCTGCTTGTAACAATTTTGCAAAGGTAGGTGCGAAAAAGAGGAATTACTTAACAGATATATTGGATTACATTCGGAAGCTGACTATAAAGTATGAAAAAATTGATGAAAAGGATTGCACAGGTGGTAACCCAACAATAGGGGATGTTGGGGATCTGACAAAGGTGAAAACTAAAGGTGCTCCAGAGAAGAAAAAAAAACAACAGGAAAAGAAGTAG 1350 0.3911 MFDLSADDMLCKEFGSEEEAYEFYKLYAKYHGFVVRKDDVTKDIRGNIIMRQFVCNREGLRKKKHFMRVDRKREHRSLTRTKCNAKLRIHYYHKSQIWKVVSLEQCHNHELTPSRYVHLHPAYRNLSHADKAQVNSLHGYGIRGCHIMGYLVAQKGGYSRVGFSKKDMYNYLDRKNQAKVKKKDVRAALSYLQGKAYSDPLLYKSSIVEFLHKFEQAKKEYRNNELLADFKTLFSEPVLTTYLHKIEKQAANIYTQEVFKEVKQEIEKANALIVSERSINGENLNFTLKKYCSPGKEVHVVFYTTQMTFLCDCRLFECRGIPCSHIISVLRSEDMDHIPTSLICKRWSKTARTDFLSYYGPDEMDPDVVEEACFSAIAAACNNFAKVGAKKRNYLTDILDYIRKLTIKYEKIDEKDCTGGNPTIGDVGDLTKVKTKGAPEKKKKQQEKK. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02322 449 PANTHER OS01G0519700 PROTEIN 204 359 - -
Seca9g02322 449 Pfam FAR1 DNA-binding domain 22 112 IPR004330 -
Seca9g02322 449 MobiDBLite consensus disorder prediction 417 449 - -
Seca9g02322 449 MobiDBLite consensus disorder prediction 433 449 - -
Seca9g02322 449 ProSiteProfiles Zinc finger SWIM-type profile. 303 334 IPR007527 GO:0008270
Seca9g02322 449 SMART 26again6 309 336 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02322 Seca-Chr9 35850406 35852394 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca9g02322 FAR1 1.8e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02322 - - ccaj:109792835 285.804