Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02315 ATGCGAACTCTTTGTGACGCTTGTGAGAGCGCTGCGGCTATTGTTTTCTGCGCCGCTGATGAGGCTGCACTCTGCCGTGCCTGCGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTAAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGCTGTGACATATGCGAGAATGCACCTGCTTTCTTCTATTGCGACACAGATGGAAGTTCTCTTTGTTTACAGTGTGATATGATAGTCCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTCTTTAGGCAAAGAGTTGAGTTTCCAGGTGATAAATCTAGTCATGGAGAAAACCCAGCTTCCCAACCTCTGGAACCAGGTGAGACTAAAAGGGGGCAAAATCCGCTTCCCAAACTAAAAATGGGAGAGAAGCAACAAAATCACAGGATGTCTCTGGTTCCGACGCCAGAACCTGATGCTGATGGGCATACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAACAGAATACATGAACAAGCATCAAATAATCAGGTTAGAATGCATGGGAAGTAA 570 0.4509 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCDTDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHGENPASQPLEPGETKRGQNPLPKLKMGEKQQNHRMSLVPTPEPDADGHTKMETKMIDLNMKPNRIHEQASNNQVRMHGK. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02315 189 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Seca9g02315 189 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Seca9g02315 189 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Seca9g02315 189 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 168 - -
Seca9g02315 189 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Seca9g02315 189 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca9g02315 189 CDD Bbox1_BBX-like 4 47 - -
Seca9g02315 189 Gene3D Classic Zinc Finger 2 91 - -
Seca9g02315 189 FunFam B-box zinc finger protein 19 2 92 - -
Seca9g02315 189 MobiDBLite consensus disorder prediction 105 159 - -
Seca9g02315 189 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca9g02315 189 SMART bboxneu5 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02315 Seca-Chr9 35795757 35798650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02315 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.749 3.90e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca9g02315 zf-B_box 4.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02315 - - gmx:100780544 372.474