Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02306 ATGTCTGCCGCCGGAGAAGGTGATGCTCCCGCCGTCGAAAAGCCGGTGGAGGAGGTGAAAGCGCCGGAGGAGCCTAAGCCTGTGAAGGAGAAGAAGCCTAAGGCTCCAAAAGAGAAGAAGCCCAAACAACCTAAGGCTAAAACCGCTTCACATCCTCCATATTTTCAGCAGATGATTAAGGAAGCCTTGTTGGCTCTGAACGAGAAGGGAGGTTCGAGCCCTTATGCCATCGCTAAGTACATGGAGGAGGAGCACAAGTCGGTGCTACCTGCGAATTTCAAGAAGATCCTTGGCTTGCAGCTCAAGAATCAAGCAGCTAGAGGGAAGCTGATGAAGATCAAGGCTTCGTATAAGCTATCTGAAGCCGCGAAGAAGGAGAAAAAGGATAGCGCTGCTGCTAAGGCCAACACAGAGAAGCAGCCACAGCGTCCGAAACGTACCAGAGCCGTAACCGCCGCTGCTCCGAAGAGCAAAAAAAGTGAGGCTCCTAAAAAGGCCGGGAAAAAGAAAACAAAGAAGGTGTCTACTATACCTGCGAAGCCCAAACAGCCCAAGTCCATCAAGTCTCCTTCTAAGAGGGCTAGGAAAGCTACTGCTGCTACTGCGTGA 609 0.514 MSAAGEGDAPAVEKPVEEVKAPEEPKPVKEKKPKAPKEKKPKQPKAKTASHPPYFQQMIKEALLALNEKGGSSPYAIAKYMEEEHKSVLPANFKKILGLQLKNQAARGKLMKIKASYKLSEAAKKEKKDSAAAKANTEKQPQRPKRTRAVTAAAPKSKKSEAPKKAGKKKTKKVSTIPAKPKQPKSIKSPSKRARKATAATA. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02306 202 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 50 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca9g02306 202 MobiDBLite consensus disorder prediction 162 176 - -
Seca9g02306 202 MobiDBLite consensus disorder prediction 1 54 - -
Seca9g02306 202 SMART h15plus2 48 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca9g02306 202 SUPERFAMILY "Winged helix" DNA-binding domain 48 131 IPR036390 -
Seca9g02306 202 MobiDBLite consensus disorder prediction 121 202 - -
Seca9g02306 202 Gene3D - 45 132 IPR036388 -
Seca9g02306 202 MobiDBLite consensus disorder prediction 121 145 - -
Seca9g02306 202 PANTHER HISTONE H1 26 196 - -
Seca9g02306 202 Pfam linker histone H1 and H5 family 51 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca9g02306 202 CDD H15 48 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca9g02306 202 PRINTS Histone H5 signature 38 59 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca9g02306 202 PRINTS Histone H5 signature 65 82 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca9g02306 202 PRINTS Histone H5 signature 173 190 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca9g02306 202 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02306 Seca-Chr9 35668682 35671004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02306 53 119 Single Myb Histone (SMH) Gene Family AT1G72740 38.806 1.35e-07 48.9