Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02301 ATGCAGGGCCTACTATCAGATGGTACAGTAATTGCAGTAAAGAAGCTCTCTTCAAAATCTAAGCAAGGAAACCGTGAGTTTGTGAATGAGATAGGAATGATATCTGGACTTCAACATCCCAATCTTGTTAGGCTTTATGGATGTTGTGTAGAAGGGAACCAACTAATACTGATATATGAATATATGGAAAATAATTGTCTATCTCGCATTCTTTTTGGGAAGGATCAAGGCAACAAAAAGAAACTGGACTGGCCGGCCAGGAAGAAAATTTGCCTTGATATAGCTAGAGCTTTGGCTTATCTCCATGAAGAGTCTAGAATAAAAATCATTCATAAGGATATAAAGACAAGTAATGTGTTGCTCGACAAGGATTTCAATGCCAAAATTTCAGATTTTGGTTTGGCAAAACTTATTGAAGATGACAAAACACATGTTAGCACCAGAATTGCAGGAACAATGTAA 462 0.368 MQGLLSDGTVIAVKKLSSKSKQGNREFVNEIGMISGLQHPNLVRLYGCCVEGNQLILIYEYMENNCLSRILFGKDQGNKKKLDWPARKKICLDIARALAYLHEESRIKIIHKDIKTSNVLLDKDFNAKISDFGLAKLIEDDKTHVSTRIAGTM. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02301 153 Gene3D Phosphorylase Kinase; domain 1 1 62 - -
Seca9g02301 153 SMART serkin_6 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02301 153 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 153 - -
Seca9g02301 153 Gene3D Transferase(Phosphotransferase) domain 1 63 153 - -
Seca9g02301 153 ProSiteProfiles Protein kinase domain profile. 1 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02301 153 FunFam Os04g0616200 protein 1 62 - -
Seca9g02301 153 FunFam Os07g0541700 protein 62 152 - -
Seca9g02301 153 Pfam Protein tyrosine and serine/threonine kinase 9 146 IPR001245 GO:0004672|GO:0006468
Seca9g02301 153 SUPERFAMILY Protein kinase-like (PK-like) 3 152 IPR011009 -
Seca9g02301 153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 109 121 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02301 Seca-Chr9 35632813 35633359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02301 2 153 Receptor kinase-like Gene Family AT1G07650 76.316 2.98e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca9g02301 PK_Tyr_Ser-Thr 3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02301 - - lja:Lj2g3v3121060.1 276.559