Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02293 ATGGAACCTCAACAACAACAACAGAGCCAACAACACTCACCAAACGAGGATGGCGGCAGTGGAAAAGGGGGGTTTCTGAGCAGGCAAAGTAGTACACGGTGGACTCCAACAACCGACCAGATAAGAATATTGAAGGACCTTTACTACAACAATGGAATTAGATCCCCAAGTGCAGAGCAGATTCAGAGGATCTCTGCTAGGCTGAGGCAGTACGGTAAGATTGAAGGCAAGAATGTCTTTTATTGGTTCCAGAACCACAAAGCTCGAGAAAGGCAGAAGAAAAGGTTCACTTCTGATGTTCCCATGCAAAGACCCCCAACAAATGCTACTTCTTGGAAACCTGATGAACCCAAGTATTCTAACATTTCACCTACTGGTATGGTTATAATTTATAAATCTCTCTCTGAATGGATCTCTCCGGTGGCTTCATCATCTTCTGCTGATATGGTTACTATGGGGCAGATAGGGAATTATGGGTATGGATCTATGCCCATGGAAAAAAGTCTTAGGGACTGCTCAATATCAGCTGGTGGAGGTAGCAGTGGTCATGTTGGAAATGCCATAAACCACAACTTGGGATGGGTGGGTGTGGATCCATATTCCCCTGCCTACGCCAATTTCTTTGACAAAATAAGGCCAAGTGATGAGATCCTGGAAGAAGAACAAGAGAATGGTTCCCCTGAGATTGAAACCCTCCCTTTATTCCCTATGCACGGTGAGGACATCCATGGCTATTGCAACCTCAAGTCTAATTCTTCTTCTAACTATGATGGTGGCTGGTATCAGACTGCAGAAGAAGGAGGGTTCAACAATGGTACTTCTCGTACTTCCTTGGAGCTCAGCCTCAACTCTTACACCCGCAGATCTCCAGATTATGCTTGA 882 0.4524 MEPQQQQQSQQHSPNEDGGSGKGGFLSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVPMQRPPTNATSWKPDEPKYSNISPTGMVIIYKSLSEWISPVASSSSADMVTMGQIGNYGYGSMPMEKSLRDCSISAGGGSSGHVGNAINHNLGWVGVDPYSPAYANFFDKIRPSDEILEEEQENGSPEIETLPLFPMHGEDIHGYCNLKSNSSSNYDGGWYQTAEEGGFNNGTSRTSLELSLNSYTRRSPDYA. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02293 293 MobiDBLite consensus disorder prediction 101 117 - -
Seca9g02293 293 CDD homeodomain 32 94 IPR001356 GO:0003677
Seca9g02293 293 Gene3D - 26 92 - -
Seca9g02293 293 MobiDBLite consensus disorder prediction 1 36 - -
Seca9g02293 293 MobiDBLite consensus disorder prediction 1 17 - -
Seca9g02293 293 Pfam Homeodomain 31 92 IPR001356 GO:0003677
Seca9g02293 293 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 10 286 IPR044555 GO:0003700|GO:0099402
Seca9g02293 293 SUPERFAMILY Homeodomain-like 25 98 IPR009057 -
Seca9g02293 293 MobiDBLite consensus disorder prediction 92 117 - -
Seca9g02293 293 ProSiteProfiles 'Homeobox' domain profile. 27 93 IPR001356 GO:0003677
Seca9g02293 293 SMART HOX_1 29 97 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02293 Seca-Chr9 35543116 35544726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02293 25 241 Wox Gene Family AT2G17950 42.412 8.73e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca9g02293 Homeodomain 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02293 - - vra:106776674 430.639