Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02287 ATGGCTGGCCCTTTTGATATGATTAGTGCTATTCACCCAGGGAAAGACTCATGGAGGCTGAGGGTGAGGGTTGTTCGCCTGTGGGAAATGTGTTCTATTGCTGAACCTGCAAAGCCATTTGCCGTTGATATGCTGTTAACTGACATTGAGGAGTGTGTGGCCTCAGGTGTTGCTCCATTACCGGTGGTTGTGGCCCAACTTTTTAAAGTCAGGCTGTACAGGGGTACTGTTGTTTTACAAAATGTGAACAACACATCGAGGATCTTGTGGAATCCTGATATTCCAGAGGCAATTGATTTTAGGAATAGCTTGGCATGCCATGGAATTGACTCTGATGTTGAGATTGGTGTTATTGAGGGGGGAAATCGTGCTGTTCCGCTGTCTGATGAATTCCTTAGATTGTATCCAAGGAAATCTGTTAATGAATTGCAGATAACTGAGGAGGAAGGGATTTTCATAGTTGATGCCACCATTGCTTCGGTTATGAAGGACGAACAATGGTGGTATGGGGCTTGCAAGTGTCACAAGGCAGTTACACCAGATGGGGGACTTTACTACTGTTCTAATTGCTTAACTCATGTAGTTGAAGTTACCCCAAGATATAAGTTGAGGGTTGAAGTTTTCCGTTGGGACGACTCTGCTTCCTTTATTCTCTTCGATTTTGACTGTGTTTATCTGCTTGGGAAGACTTGCAAGGATCTGTTTGCAGAGTGCAGGTTGCAGTCTAAATTTCAGCCCCCTTTTCCCGAGGTTGATGGTGAAGGAAATTCTCAGAGTCCCACTGATGCTATGACTGGTAGTATTGAGGCCATTGGTGATATGTCTCTCAATTCAGTCGGCTTTACTGATGCATCATCCAACTCCAGTGTGCATATGTCTCTTCACAGCAGCTCCAGTGTGCAATGCTCCAACACCAGCCATGATGATGAGGGAGATGATGACACCCCACTTACATTCAAGCGTCGCAAGCTGAAGCCGATTAAGTTAGAGGAAGAATAG 999 0.4515 MAGPFDMISAIHPGKDSWRLRVRVVRLWEMCSIAEPAKPFAVDMLLTDIEECVASGVAPLPVVVAQLFKVRLYRGTVVLQNVNNTSRILWNPDIPEAIDFRNSLACHGIDSDVEIGVIEGGNRAVPLSDEFLRLYPRKSVNELQITEEEGIFIVDATIASVMKDEQWWYGACKCHKAVTPDGGLYYCSNCLTHVVEVTPRYKLRVEVFRWDDSASFILFDFDCVYLLGKTCKDLFAECRLQSKFQPPFPEVDGEGNSQSPTDAMTGSIEAIGDMSLNSVGFTDASSNSSVHMSLHSSSSVQCSNTSHDDEGDDDTPLTFKRRKLKPIKLEEE. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02287 332 Pfam Replication factor-A C terminal domain 152 235 IPR013955 -
Seca9g02287 332 MobiDBLite consensus disorder prediction 286 332 - -
Seca9g02287 332 Gene3D - 132 260 IPR012340 -
Seca9g02287 332 MobiDBLite consensus disorder prediction 286 305 - -
Seca9g02287 332 CDD RPA1_DBD_C 147 251 IPR047192 -
Seca9g02287 332 PANTHER OS03G0429900 PROTEIN 7 301 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g02287 332 MobiDBLite consensus disorder prediction 306 332 - -
Seca9g02287 332 SUPERFAMILY Nucleic acid-binding proteins 135 237 IPR012340 -
Seca9g02287 332 Gene3D - 40 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02287 Seca-Chr9 35433230 35435869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02287 61 234 Core DNA Replication Machinery Family AT5G08020 27.717 2.64e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02287 - - lja:Lj3g3v3527180.1 203.756