Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02269 ATGGCAGAAAACAAAGACGAAACTTGTTCGGAAAGATCTCTATGTTCAATGGGTAACAAGTTCAGATACATGTTTGATAGATTATGCGGTTATTCCACTTTATGGAAGAAAAATAGCACACCAAAAGGTCGAAGAATTTTCCACAGAGATGTGGAGAAAGAAGAATTCCAGTATGCCAGTACTCATTGTCTCTCATCCTACTACAGTGTCTTTGTTGTTCGATTAGCAATCATGGTGATGCTAGCCATCTTGATAGGGCTTCTCACTATACTAACATGGCACTTCACCAAGATTTATACAAGAAAATCACTCAATAGCTTGGCATATGGTCTGCGTTATGAACTTTTGCAACGTCCCATCTTGCGGATGTGGAACATTTTGAATTCTACTTCTGAAATTACAACAGCTCAGGTCAAGTTATCTGAGTATGTTATCAGACGTTACAGCAACCCTGCCACTCAAGCAGAGCAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCACTTTTTGCTAGTAGGAAAGCTCTCAACTCAATAACTATCAATTATAAGAATGGATTTGTTCAAGCATTCCATAGAGATCTTAAGGACAACAACACATTTTACATCTACTCTGATCTTTCTAACTACTCCATGGTTGCCAGCAATTCTAATGAGATCAGTTCCCTTTCAACTCATCAAGCTTGGGATGACAAAGCCATTCATGGTAACTTTTCTGCAATTTGGTACCGTGAACCACTTGACCCTGTCAGTGGTGAGAAGATTGGTAAAGCTATGCAAATTGCACCTGAAGATTTGATCAACATAGCTGGCCTTTCTCAAGTACCTGATGGTGTAGCTTCTTGGCATGTTGCTGTGAGCAAGTATACAGATTCACCATTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAAAGTATTATGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGCTAATGAGAGAACTAGTTGAGTTGCATAGTGGACATATGTATTTGACTTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAGTGCACCTCTATTGTCAAATTCATCAAATCGGCCTAAGCTTAAGATGGCTGTTGATTGTGAAAATGATGTAATACGACTTGGAGCTGAGTGGTTACAAAGAAATTATGGGAGCAATTTTCCATCAAGCCATGAGATTCATGTAGAGAATGCCAAGCTAGGCCACCAGCAATATTACATTGACTCATTTTTCCTAAACTTGAAGAGACTTCCTTTGGTAGGTGTAATCATCATACCAAGAAAGTATATCATGGGGCAGGTGGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTGAGAGCAGAACTAATAAATCAACTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTAATATCTGATGACTGTCTCACAAATGAGCAATATTCAACAGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCTTGGATCTAAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGAAGGGAACTTGAAGGGCTTGTGGATATGTTTTCTGTTCAGTGCATTAACCACAATGTGGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAGGTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATATTTGCAAATTTGATAAACAATTCAATCAAGTTTACTCCATCGGGTCATATTATTCTGCGAGGATGGTGTGAAAACCCCAAATCTTGCAGTGAAAGTCCGAATTTTCCTCTTGATCAGAAGAAATCACGGAGTTTACAAAAGTGCAGAGAGAAGCCAAATGCAAAGAGAACATTTATGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACCACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAATAAGATGGGTGGGGAAATCAAGGTTGTCAAAAAGGAGGGTTCAGGGACATTGATGCGATTAAGCTTGCTTCTCAGTGCACCCATGGATGTTACAGAACAACATTGTGCAGTAGATTTGAAAGACAGTGGCTTAGTGGTACTGCTTTCTCTGCACGGCAACATGGGTCGACTAATTACATCCAAGTGGTTACAGAAAAATGGGGTGTGCACAATGGAAGCTTCTGAATGGAATGGACTAACTCAAATTTTGAGACAACTCTTTCATGCAAGAAGTTCAATCCATAATAATGACTTTGATGCACATTATCCAGTACATGAGGGATTGAAGCCTAAACTACTCACCATAAAAGATATGAGGAACCCTGTTTTTGTCATTGTTGTTGACATTGGACTACTTGATTTGAGCACAGATATATGGAAGGAACAGCTTAACTTCCTTCATAGGTACTTTGGGAGAGCAAAGTTTGTGTGGATGCTAAATCATGACACCTCAAATACCATAAAGATGGAGCTCCGTAGGAAAGGGCATGTACTAATGGTCAACAAACCCCTTTACAAAGCAAAAATGATTCACATTTTGGAAGCTGTCATAAAGGAGAGAAATCTTGAACTACAAAAGAAAAACATGAATGCTCCAAGAAGCACAATGAAAGAGGGTGATTTGCACGAGTTTCTTGAGATTGATTCTACTCATTTTGATGCTGCTAGCTCTGATGATTCTGACATATCTGAAATGGGTGGTTGTTCTAATCCTGATAGTGCCAATGGAGATAAACCAATTGTAAAGACAGCCATATCCCATTCATCATCACCAAACCAGATGAGTAGCTGCTCAGTTAGATTAACCAATGAATATATGGAAGAGAACAATATGAGGAAAGAAGAATCTTGTCAGAGTAGCCCCAATTCCAATTATACCACAGAAGACACCCAACCTAAACCACAGCCAACTAAAGAACCATCCTTTCCAACAGAAGCACAAGATGAAGAATCTGAATGTGAGGAAACACATAGGGTCACCAGCTCAAGTAAAGCAATAAATGAAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAGGGTAGCAACCATAATGCTTGAAAAAATGGGAGCTGCTGTTGTCGCTGTAGGTGATGGACAACAAGCAGTAGATGCTCTCAATTGCATGGTAGGAGCTGAAGATTTTAGAAGAGAATCTCTCCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTTTACTTGCCATCCATATGACTTAATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGCAATAAGGAAATCAGAAGAGGGAACAGGGTTGCACATTCCCATTGTTGCTCTTACAGCCCATGCAATGTCATGTGATGAAGCCAAATGTCTGCAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGTTGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTGTCTTCTCACATAA 3735 0.3997 MAENKDETCSERSLCSMGNKFRYMFDRLCGYSTLWKKNSTPKGRRIFHRDVEKEEFQYASTHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTRKSLNSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSEYVIRRYSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVASNSNEISSLSTHQAWDDKAIHGNFSAIWYREPLDPVSGEKIGKAMQIAPEDLINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWDSSNKSIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLSNSSNRPKLKMAVDCENDVIRLGAEWLQRNYGSNFPSSHEIHVENAKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPKSCSESPNFPLDQKKSRSLQKCREKPNAKRTFMRDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVVKKEGSGTLMRLSLLLSAPMDVTEQHCAVDLKDSGLVVLLSLHGNMGRLITSKWLQKNGVCTMEASEWNGLTQILRQLFHARSSIHNNDFDAHYPVHEGLKPKLLTIKDMRNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRAKFVWMLNHDTSNTIKMELRRKGHVLMVNKPLYKAKMIHILEAVIKERNLELQKKNMNAPRSTMKEGDLHEFLEIDSTHFDAASSDDSDISEMGGCSNPDSANGDKPIVKTAISHSSSPNQMSSCSVRLTNEYMEENNMRKEESCQSSPNSNYTTEDTQPKPQPTKEPSFPTEAQDEESECEETHRVTSSSKAINEKKSLEGLKILLAEDTPVLQRVATIMLEKMGAAVVAVGDGQQAVDALNCMVGAEDFRRESLQKERNTRSQTEIFTCHPYDLILMDCQMPKMDGYEATKAIRKSEEGTGLHIPIVALTAHAMSCDEAKCLQVGMDAYLTKPIDFKLMVSTILSLTKTTSCLLT. 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02269 1244 ProSiteProfiles Response regulatory domain profile. 1091 1236 IPR001789 GO:0000160
Seca9g02269 1244 FunFam Histidine kinase 1-like protein 487 566 - -
Seca9g02269 1244 ProSiteProfiles Histidine kinase domain profile. 506 761 IPR005467 -
Seca9g02269 1244 PRINTS Bacterial sensor protein C-terminal signature 745 758 IPR004358 GO:0016310|GO:0016772
Seca9g02269 1244 PRINTS Bacterial sensor protein C-terminal signature 721 739 IPR004358 GO:0016310|GO:0016772
Seca9g02269 1244 PRINTS Bacterial sensor protein C-terminal signature 704 714 IPR004358 GO:0016310|GO:0016772
Seca9g02269 1244 PRINTS Bacterial sensor protein C-terminal signature 686 700 IPR004358 GO:0016310|GO:0016772
Seca9g02269 1244 MobiDBLite consensus disorder prediction 1030 1050 - -
Seca9g02269 1244 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 612 759 IPR003594 -
Seca9g02269 1244 MobiDBLite consensus disorder prediction 1025 1079 - -
Seca9g02269 1244 CDD HisKA 500 561 IPR003661 GO:0000155|GO:0007165
Seca9g02269 1244 SMART REC_2 1090 1232 IPR001789 GO:0000160
Seca9g02269 1244 SMART HKATPase_4 612 761 IPR003594 -
Seca9g02269 1244 Gene3D - 1067 1238 - -
Seca9g02269 1244 SMART HisKA_10 499 565 IPR003661 GO:0000155|GO:0007165
Seca9g02269 1244 Gene3D - 487 566 - -
Seca9g02269 1244 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 554 757 IPR036890 -
Seca9g02269 1244 MobiDBLite consensus disorder prediction 970 1013 - -
Seca9g02269 1244 MobiDBLite consensus disorder prediction 997 1013 - -
Seca9g02269 1244 Pfam Response regulator receiver domain 1092 1231 IPR001789 GO:0000160
Seca9g02269 1244 PANTHER TWO-COMPONENT HISTIDINE KINASE 56 766 - -
Seca9g02269 1244 FunFam Ethylene receptor 1 565 764 - -
Seca9g02269 1244 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 487 566 IPR036097 GO:0000155|GO:0007165
Seca9g02269 1244 CDD REC_hyHK_CKI1_RcsC-like 1092 1232 - -
Seca9g02269 1244 Gene3D - 567 762 IPR036890 -
Seca9g02269 1244 SUPERFAMILY CheY-like 1088 1236 IPR011006 -
Seca9g02269 1244 Pfam His Kinase A (phospho-acceptor) domain 500 565 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02269 Seca-Chr9 35247473 35254237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02269 20 1240 Histidine Kinase Gene Family AT2G17820 65.069 0.0 1592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca9g02269 HATPase_c 1.2e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02269 - - gmx:100814068 2085.84