Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02224 ATGGGGGACAACGGCGTTGACGGCGACGGCGCCGTTTATCTACATGGCGACCTCGATTTGACAATCGTCAAGGCTCGCCGTTTGCCTAACATGGACATCTTCTCCGAGCGTGTCCGCCGCTGCGTCACCGCCTGTGACACAATCAAATTCCACTCATCAGAAACCGCTTCAGACGGGAGCGAAAGTGGGACCCACCACCGCCACGTCAAGAAGATTATCACAAGCGACCCGTACGTCACCGTTTCGGTGCCGCAGGCAACCGTCGCTCGCACGCGCGTTCTCAAGAATTCTCAGAACCCTGTCTGGAACGAACACTTCAACATTCCCCTTGCTCACCGCGTCGTCGATTTGGAATTCCGCGTCAAGGACGACGACGTTTTCGGCGCTCAGATCATGGGGACTGTTAAGATTCCGGCAAGGAGGATTCTCTCCGGCGAGTTGATTTCCGGCTGGTTTCCGATTCTCGGGTCCTCCGGCAAGCCGCCGAAGCCGGACACCGCGTTGTGCATCGAGATGAAGTTCACGCCGGTGGAAGAGAATCCGCTTTACCAGCGAGGCATCGCGGCGGATCCCGAGCATAAGGGCGTGAGGCATACGTATTTTCCGGTGAGGAAGGGAAGCTCAGTGAGGTTGTACCAAGATGCACAGTGCCCTAATGGGATGCTACCGGAGATTCAACTCGAGAGTGGGAAGGTTTATAGGCACGAGAAGTGCTGGGAAGATATTTGCTATGCTATATCAGAAGCTCATCACATGGTGTATCTGGTGGGTTGGTCGATCTACCACAAGGTGAAGCTTGTTAGGGAACCCACTAAGCCTTTGCCACGAGGTGGAGATTTGACGCTTGGTGAGTTGCTGAAGTACAAGTCTGAAGAAGGGGTGCGAATTTTGTTGCTGGTTTGGGATGATAAGACTTCCCATGATAAGGTCTTCTTCAAGACGGCTGGGGTAATGCAGACTCATGATGAGGAAACAAGGAAGTTTTTTAAACACTCTTCAGTTATGTGTGTTTTGGCGCCTCGCTATGCCAGCAGCAAGATGAGCCTCTTGAAGCAACAGGTTGTTGGGACTGTCTTCACACACCACCAAAAATGTGTTATTGTGGACACACAGGCTCCTGGTAATAACCGAAAGATAACTGCATTTATAGGAGGTCTTGATTTATGTGATGGTCGGTATGACACACCTGAGCATCGACTTTTTCGTGACCTTGACACTGTATTTTCTGGTGATTTCCACAATCCCACATTTCCTTCTGGAACAAGGGCACCTAGACAACCATGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATATGATATTCTTATTAATTTTGAGCAGCGGTGGAGAAAAGCAACTAAGTGGAAAGAGTTTGCAATTATTTTTAAAAAATCTTCTCATTGGAAGGATGATGCTTTATTAAAAATTGAACGCATCTCGTGGATATTAAGTCCTTCCCTTCCTTCCCCTCCTTCCTCAAAGGAAAAGGAAAATTATACAATTGTTCCTGGGGATGACCCTTTAGTATGGGTTTCTAGTGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGTTCCATTGACTCAGGATCCCTGAAAGGATTTCCCAAACGTGTTGATATTGCTCTATCGCAGAATCTTATCTGTGCTAAAGATTTGGTTATAGACAAAAGCATTCAAACAGGATACATTCAAGCGATCAGATCTGCTCAACATTTTATTTATATTGAAAACCAATACTTTATCGGATCATCATATGCATGGCCAGGATACAAAGACGCAGGGGCTGATAATCTCATCCCAATGGAATTGGCACTGAAAATTGTTAATAAAATCAGAGCTAAGGAGAGATTTGCTGTCTATATTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAAACTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGTATGTGATTGTCTAATGTTTAAAGTTTATAAACTAGTCCAATTGTGGAAATTTATAATATCTGAATATGAAGCCTAA 2019 0.4631 MGDNGVDGDGAVYLHGDLDLTIVKARRLPNMDIFSERVRRCVTACDTIKFHSSETASDGSESGTHHRHVKKIITSDPYVTVSVPQATVARTRVLKNSQNPVWNEHFNIPLAHRVVDLEFRVKDDDVFGAQIMGTVKIPARRILSGELISGWFPILGSSGKPPKPDTALCIEMKFTPVEENPLYQRGIAADPEHKGVRHTYFPVRKGSSVRLYQDAQCPNGMLPEIQLESGKVYRHEKCWEDICYAISEAHHMVYLVGWSIYHKVKLVREPTKPLPRGGDLTLGELLKYKSEEGVRILLLVWDDKTSHDKVFFKTAGVMQTHDEETRKFFKHSSVMCVLAPRYASSKMSLLKQQVVGTVFTHHQKCVIVDTQAPGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFSGDFHNPTFPSGTRAPRQPWHDLHCRIDGPAAYDILINFEQRWRKATKWKEFAIIFKKSSHWKDDALLKIERISWILSPSLPSPPSSKEKENYTIVPGDDPLVWVSSEDDPENWHVQIFRSIDSGSLKGFPKRVDIALSQNLICAKDLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWPGYKDAGADNLIPMELALKIVNKIRAKERFAVYIVLPMWPEGDPKTGAMQEILFWQVCDCLMFKVYKLVQLWKFIISEYEA. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02224 672 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Seca9g02224 672 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 177 IPR035892 -
Seca9g02224 672 SMART C2_3c 17 151 IPR000008 -
Seca9g02224 672 Gene3D Endonuclease Chain A 531 646 - -
Seca9g02224 672 SUPERFAMILY Phospholipase D/nuclease 559 651 - -
Seca9g02224 672 Pfam Phospholipase D Active site motif 357 392 IPR001736 GO:0003824
Seca9g02224 672 CDD C2_plant_PLD 10 175 - -
Seca9g02224 672 Gene3D C2 domain 15 184 IPR035892 -
Seca9g02224 672 Pfam C2 domain 16 154 IPR000008 -
Seca9g02224 672 SUPERFAMILY Phospholipase D/nuclease 199 461 - -
Seca9g02224 672 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Seca9g02224 672 FunFam Phospholipase D delta 229 473 - -
Seca9g02224 672 Gene3D Endonuclease Chain A 224 477 - -
Seca9g02224 672 PANTHER PHOSPHOLIPASE D 11 649 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02224 Seca-Chr9 34820613 34825745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02224 9 647 Phospholipase D Gene Family (Wang group) AT4G35790 72.784 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02224 K01115 - gmx:100814486 1130.55