Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02217 ATGGGTGTGACACCATATTTTGACAGGCCCATGCACGAGATTACCTTTTCAACAGTTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCAATACTTGGTGAGATTGGACTGAATATTCAAGAAGCCCATGCATTTTCCACCTCTGATGGGTTTTCTCTGGATGTCTTTGTTGTTGAGGGATGGCCTAATGAGGAAACTGAGGAGCTTAAAGGTGTATTGGAAAAGGAGATTTTGAGGGTTAAGGAACAATACCCATCAAATCAGGGCATACTTTCTGCTTCCAATGAACAATACCAGATAAAGATGGAACCCTCCCCTCATTGCATACAAATACCATCCGATGGAGCTGATGTCTGGGAAATTGATCCCAACCAGCTGAAATATGAAAACAAAGTTGGCTCTGGGTCATTCGGTGACTTGTACAGAGGTACATATTGCAGCCAAGATGTGGCTATCAAAATTCTTAAGCCCGAGCGCATAAGTACAGATATGCTGAGAGAGTTTGCGCAGGAAGTTTATATCATGAGGAAGATTCGACACAAGAATGTTGTTCAGTTCATTGGTGCATGTACTCGGCCACCAAATCTTTGTATTGTTACAGAGTTCATGTCTAGAGGAAGCCTATATGACTTTCTGCACAAACAAAGGGGTGTATTTAAGCTTCCTTCTTTACTAAAAGTAGCGATTGATGTCTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATCCACAGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAATTGGTCAAGGTTGCTGATTTTGGGGTTGCCAGAGTCCAAACTCAGTCTGGAGTGATGACTGCTGAAACTGGAACATACCGCTGGATGGCCCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCGGATGTTTTCAGTTTTGGAATAGCTCTTTGGGAGCTTTTAACCGGAGAGCTACCTTACTCATACTTGACTCCATTACAAGCAGCAGTTGGCGTGGTGCAGAAGGTTTGGCCTACGGCCTACAATTCCCAAAAATACACATCCAAGACTTTCTGA 1059 0.4287 MGVTPYFDRPMHEITFSTVDKPKLLSQLTSILGEIGLNIQEAHAFSTSDGFSLDVFVVEGWPNEETEELKGVLEKEILRVKEQYPSNQGILSASNEQYQIKMEPSPHCIQIPSDGADVWEIDPNQLKYENKVGSGSFGDLYRGTYCSQDVAIKILKPERISTDMLREFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENELVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSYLTPLQAAVGVVQKVWPTAYNSQKYTSKTF. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02217 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Seca9g02217 352 SUPERFAMILY Protein kinase-like (PK-like) 102 338 IPR011009 -
Seca9g02217 352 ProSiteProfiles ACT domain profile. 13 88 IPR002912 -
Seca9g02217 352 ProSitePatterns Protein kinases ATP-binding region signature. 132 153 IPR017441 GO:0005524
Seca9g02217 352 PRINTS Tyrosine kinase catalytic domain signature 237 255 IPR001245 GO:0004672|GO:0006468
Seca9g02217 352 PRINTS Tyrosine kinase catalytic domain signature 200 213 IPR001245 GO:0004672|GO:0006468
Seca9g02217 352 PRINTS Tyrosine kinase catalytic domain signature 283 293 IPR001245 GO:0004672|GO:0006468
Seca9g02217 352 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672|GO:0006468
Seca9g02217 352 SUPERFAMILY ACT-like 11 75 IPR045865 -
Seca9g02217 352 CDD STKc_MAP3K-like 132 336 - -
Seca9g02217 352 ProSiteProfiles Protein kinase domain profile. 126 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02217 352 Gene3D Transferase(Phosphotransferase) domain 1 205 349 - -
Seca9g02217 352 Coils Coil 63 83 - -
Seca9g02217 352 Pfam Protein tyrosine and serine/threonine kinase 126 328 IPR001245 GO:0004672|GO:0006468
Seca9g02217 352 FunFam Serine/threonine-protein kinase isoform 1 116 204 - -
Seca9g02217 352 SMART serkin_6 126 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02217 352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 81 335 - -
Seca9g02217 352 CDD ACT_TyrKc 11 78 - -
Seca9g02217 352 Gene3D Phosphorylase Kinase; domain 1 116 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02217 Seca-Chr9 34759009 34769423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02217 9 336 MAP Kinase Kinase Kinase AT4G35780 78.049 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca9g02217 PK_Tyr_Ser-Thr 1.1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02217 - - gmx:100816767 639.032