Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02190 ATGGGAGGTGACGCTGCAGCTGAGGGTGTGACGGAGCCTAAGGCCGCTGATGGAGGAGTCACCATCAACATTCGCTGCTCCAATGGTTCTAAGTTTTCTGTTCATATTAATCTCGAATCCCTCGTCGGATCCTTCAAGGAGGTCGTCGCTCGGAACTGTGACATCCCCGCCGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTCAAGGATGATCAAACCCTGCAAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCACCTTCTAATGCAACCAGTGGGACTAATAATAGTGGTGCCAATACCACAACAACTAATACGAGAGGTGCTAGTGCTAATGAGGGTGGTGGCTTAGGAGGGCCTGGAATGGGAGCTTCACTGTTCCCGGGACTAGGTACCAATGGGATGGGAGGCAGTGGCCTCAATGGCTTATTTGGAGCGGGCCTTCCAGATCTTGAACAAATGCAGCAACCATTTTTATCAAATCCCAATTTAGTGAGAGAAATAATGAATACACCTGCTATGCAGAATTTAATAAATAATCCTGATATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTAAATGATCCCAGCACTCTTCGCCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCAACCACGATGGCTGGTCATACAGGAAATGATAGTGCAGTCAGGAATCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTTCCCCTGTACCCAATACTAATCCGCTTCCTAATCCTTGGTCCTCTACTGGAACTGGAGGTACCCAAAGTAATACCAGAAGGTCAACTACTGGTGGGGATGCTCGACAGCAGACACCCACTCCCACTGGCTTAGGTGGGCTTGGTCTGCCAGATCTTGAAGGCATGTTGAGTGGTACACCAGATGCTGCTTTATTGACCCAACTAATGCAAAATCCAGCTATTTCACAGATGATGCAAAGTATCCTTTCCAACCCACAGACTATGAATCAGAAAATTGTATTCAAGAAAAGTGTGGCCTAA 1200 0.4642 MGGDAAAEGVTEPKAADGGVTINIRCSNGSKFSVHINLESLVGSFKEVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNATSGTNNSGANTTTTNTRGASANEGGGLGGPGMGASLFPGLGTNGMGGSGLNGLFGAGLPDLEQMQQPFLSNPNLVREIMNTPAMQNLINNPDIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGHTGNDSAVRNQSTNPSTTSSEATSPVPNTNPLPNPWSSTGTGGTQSNTRRSTTGGDARQQTPTPTGLGGLGLPDLEGMLSGTPDAALLTQLMQNPAISQMMQSILSNPQTMNQKIVFKKSVA. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02190 399 MobiDBLite consensus disorder prediction 93 124 - -
Seca9g02190 399 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Seca9g02190 399 PANTHER UBIQUILIN 15 391 IPR015496 -
Seca9g02190 399 FunFam Ubiquitin domain-containing protein DSK2b 195 251 - -
Seca9g02190 399 CDD Ubl_Dsk2p_like 20 92 - -
Seca9g02190 399 MobiDBLite consensus disorder prediction 274 343 - -
Seca9g02190 399 MobiDBLite consensus disorder prediction 274 353 - -
Seca9g02190 399 Gene3D - 8 105 - -
Seca9g02190 399 SMART CBM 340 391 IPR006636 -
Seca9g02190 399 SMART CBM 198 237 IPR006636 -
Seca9g02190 399 SMART CBM 148 185 IPR006636 -
Seca9g02190 399 SMART ubq_7 20 91 IPR000626 GO:0005515
Seca9g02190 399 MobiDBLite consensus disorder prediction 93 118 - -
Seca9g02190 399 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Seca9g02190 399 Gene3D - 193 251 - -
Seca9g02190 399 SUPERFAMILY Ubiquitin-like 13 107 IPR029071 -
Seca9g02190 399 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02190 Seca-Chr9 34434429 34439378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02190 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 1.10e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02190 K04523 - gmx:100797539 594.734