Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02189 ATGGAGAAGCAGAACCCTTCTTGTGATGATTCCCCAAAGACTCCTCCCTCTGATCATGATGAAGTTGTTGTTCCTCCCACTGAAGAAGGGGGAAGAGTGGAGGAGAAAGAAATAATCATGAAATCTCCTAGGCAAGTGTTGGAGGAATTAAGTGCTGGTGATCATGATGATCACGATGGTGGTGGTAATAATAGCGCTAGTCTTGGTGGTGGTTCTGCTGTGGCGGTGGCGGTGGGAGTGGGTGGTGGTGGTGGTGGTTCGGTGGTGGTGGCGGAAGGTGCGGCAGTTGTGAGGAAGAGAAAGAGTCCTGAAGTGAAAGACCCTCCTCGTGGTGTACCAACTTGCCCTGTCTGTCAGAAACAGTTTTCCTCCTGGAAGGGCGCGTTTGGTCACATGCGCAAACACCCTGAACGTGAATATCGCGGTTTCTATCACCCTCCTGTTTTCAACTCCACTTCTTCTTCACAACAACCACAACCACGTGGTGGTGGTGATGGTGGAGAGAGAAGTAAAGGGAAGGAAAAGAGTGGGGAGAAAGAGAAAGGAGGGGGAGGATCATCACCAATTCAAGGGCTTGTATTTGATCTGAACCAACCAATAGAGGGAGGGGGATCCTCTTCTGCTGCTGCTAATGAAGAAGCACAAGCACCTGTTAATATTGCTGAAGAAGAAGATGTTGGGGAAAGGAAATTAAGGTTATTTGACTTGAATGAGATGCCAACCGCTGAAGATGATGATGATCATCATGATATATGA 756 0.4828 MEKQNPSCDDSPKTPPSDHDEVVVPPTEEGGRVEEKEIIMKSPRQVLEELSAGDHDDHDGGGNNSASLGGGSAVAVAVGVGGGGGGSVVVAEGAAVVRKRKSPEVKDPPRGVPTCPVCQKQFSSWKGAFGHMRKHPEREYRGFYHPPVFNSTSSSQQPQPRGGGDGGERSKGKEKSGEKEKGGGGSSPIQGLVFDLNQPIEGGGSSSAAANEEAQAPVNIAEEEDVGERKLRLFDLNEMPTAEDDDDHHDI. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02189 251 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Seca9g02189 251 MobiDBLite consensus disorder prediction 1 70 - -
Seca9g02189 251 MobiDBLite consensus disorder prediction 166 181 - -
Seca9g02189 251 MobiDBLite consensus disorder prediction 147 161 - -
Seca9g02189 251 MobiDBLite consensus disorder prediction 1 61 - -
Seca9g02189 251 MobiDBLite consensus disorder prediction 222 251 - -
Seca9g02189 251 MobiDBLite consensus disorder prediction 138 251 - -
Seca9g02189 251 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 92 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02189 Seca-Chr9 34290689 34291611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02189 107 157 C2H2 Transcription Factor Family AT4G35280 43.396 5.00e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca9g02189 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02189 - - aprc:113870097 143.665