Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02179 ATGCCGAAAGCCACCACTGATGCCAAAGCTGCCGATAACCGGTTGAAGCGCAAGGGCGCTGGAACAGGAAGGAAGCAGTCGAAGAAAGCTGCAAAGGATCCTAACAAGCCTAAGAGGCCTCCCAGCGCTTTCTTTGTTTTCATGTCTGAGTTCAGAGAACAGTTCAAGAAGGAGAATCCAAGCAACAAATCTGTTGCTGTGGTCGGTAAGGCTGGCGGTAACAGATGGAAAGCTATGTCTGATGCCGATAAGGCTCCTTACATTGCTAAGGCAGAAAAGAAGAAAGAGGAGTATGAAAAATCTCTTCGCGCCTACAATAATGGATTGGCTGAGGGCAAAAACCCCTCGGAGGAAGAAGGGTCTGACAAGTCAAAGTCTGAAGTCAATGATGAGGAAGACGATGTAAAACTCTTCTCATTGCTTGTATTTTCTATTTTCTTAGATGCCTGGATGAAGATGACGACGAGTAAAGTTACTAGTGACGGAGGAAGAGGCTTAGGTGTTACTGTTGGAATATAA 519 0.4566 MPKATTDAKAADNRLKRKGAGTGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKENPSNKSVAVVGKAGGNRWKAMSDADKAPYIAKAEKKKEEYEKSLRAYNNGLAEGKNPSEEEGSDKSKSEVNDEEDDVKLFSLLVFSIFLDAWMKMTTSKVTSDGGRGLGVTVGI. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02179 172 MobiDBLite consensus disorder prediction 115 132 - -
Seca9g02179 172 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Seca9g02179 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 134 IPR031061 -
Seca9g02179 172 MobiDBLite consensus disorder prediction 1 43 - -
Seca9g02179 172 Coils Coil 88 108 - -
Seca9g02179 172 SMART hmgende2 36 107 IPR009071 -
Seca9g02179 172 SUPERFAMILY HMG-box 24 106 IPR036910 -
Seca9g02179 172 CDD HMG-box_AtHMGB1-like 38 87 - -
Seca9g02179 172 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Seca9g02179 172 Gene3D High mobility group box domain 21 126 IPR036910 -
Seca9g02179 172 MobiDBLite consensus disorder prediction 102 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02179 Seca-Chr9 34170505 34172581 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca9g02179 HMG_box 1.3e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02179 K25507 - gmx:100499992 200.29