Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02176 ATGCCGAAAGCCACCACTGATGCCAAAGCTGCCGATAACCGGTTGAAGCGCAAGGGCGCTGGAACAGGTAGGAAGCAGTCGAAGAAAGCTGCAAAGGATCCTAACAAGCCTAAGAGGCCTCCCAGCGCTTTCTTTGTTTTCATGTCTGAGTTCAGAGAACAGTTCAAGAAGGAGAATCCAAGCAACAAATCTGTTGCTGTGGTGAGTGATGCGATCTGGTTTTTATTGTGCTTTTCTGTCGGTAAGGCTGGCGGTAACAGATGGAAAGCTATGTCTGATGCCGATAAGGCTCCTTACATTGCTAAGGCAGAAAAGAAGAAAGAGGAGTATGAAAAATCTCTTCGCGCCTACAATAATGGATTGGCTGAGGGCAAAAACCCCTTGGAGGAAGAAGGGTCTGACAAGTCAAAGTCTGAAGTCAATGATGAGGAAGACGATGATGAGGATGACGACGAGTAA 459 0.4706 MPKATTDAKAADNRLKRKGAGTGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKENPSNKSVAVVSDAIWFLLCFSVGKAGGNRWKAMSDADKAPYIAKAEKKKEEYEKSLRAYNNGLAEGKNPLEEEGSDKSKSEVNDEEDDDEDDDE. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02176 152 MobiDBLite consensus disorder prediction 1 42 - -
Seca9g02176 152 CDD HMG-box_AtHMGB1-like 38 99 - -
Seca9g02176 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 118 IPR009071 -
Seca9g02176 152 Coils Coil 100 120 - -
Seca9g02176 152 Gene3D High mobility group box domain 21 142 IPR036910 -
Seca9g02176 152 SUPERFAMILY HMG-box 24 118 IPR036910 -
Seca9g02176 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 149 IPR031061 -
Seca9g02176 152 SMART hmgende2 36 119 IPR009071 -
Seca9g02176 152 MobiDBLite consensus disorder prediction 118 152 - -
Seca9g02176 152 Pfam HMG-box domain 34 117 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02176 Seca-Chr9 34146956 34149160 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca9g02176 HMG_box_2 6.7e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02176 K25507 - gmx:100499992 184.882