Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02172 ATGGGAGGATTATTGCACTTTTTCGAATTCAATCAGGGGAGGATGGCCAAGAAAGTCCATGCTCATAAGAGACATCATGGCGGCTTGGAAGCTCCTCGAAATAGTGTAGATATGCAAGTAGAAACATCTCAGAACTTCTGTTCACAAGGAGAATTACCCTACTATTATCAAGTAGAGGAAGACGGGTCTGAGAATAATCATTATTCAAATGCGGGTTCAATGAAAAAATTGATCAATGAAGAGCTATCCAAACGATCAAGCACCAGACAAAATGCGCCAAGCCTTGTGGCAAGGTTGATGGGGATAGATATGATGCCATTAGACACTAAATCTGTTGCTCCCTCAGATAAAAGAGTAAGTGAAAATATTGGAAAGAAGTTTTCAAACAAGGGAATAAACGGAAGGGGTTCGGTTAGTTGGGAATCTTCCAACTTTAATTCTTCCAGTCAGATGGAATTTGATTCATTTTATGAAGACACAGATGATGATGATGGATGGAACCGGAGTTTTGGAGAACCAAGGCCACGAGAACATCCTCAAGAAGAGGAACTCCAAAAATTCAGGAAAGAGTTTGAAGCATATCAAGCAGCAAGGTTTCTGGAATGTTCTAAGGTTGCTGATATCGACAGTGTTTCTAGACGATTGCTTGTTCAGGAGAATCTGAACAAGGAAAAGTTGCCACATAATACAAGTTTACCGAGAGCAGCAACAGGGAAATTTGCAGGGCTTGACACCCCCTTATTCAAAACAGAACTACCTGACAGTGGTGGTTCAGAATATTGTGGTGATACGATGGAGTTAATCCCAGCTATGCAAAAGAAAACCTTTCCTTCAAAGAGCAGAACTCTAAGTAGAGACTTTGAGGAGTCCTTAATGATGAAATCTTATAACAGATTAGACATATGTTCTTCCCCCCCTCGGATAGTTATCTTGAAGCCTGGTCCTGACAGCATTTGCAACCATGAAGAGAATTGGACCAGTTCATCAGGCACTTTAACAGGGAGAAATAGTATAGAAGATTTTCTTGAGGAGGTGAAAGAGCGTTTGAAATCTGAACTGCAAGGAAAAACTGTCAAAAAGGGTTCTGTGGTTCGAGGAAGTGAAATTGAGACACTTTACAATAAAAAACCATCTGATCCTAAACTTATAGCCCGTCATATAGTGAAGCAAGTCAGAGAAAGTGTGACTAGAGATACTGACACAAATATGGTCCGCTCAGAATCAACAAGAACATACAAAAGTGAAATGCAGTTCAATGGACCAAGTTTCCCAGAATTTATCAGTAGAGATACCAGGAGGTTCTTGTCAGAGAGGCTAAGTAATATTGTGAAAAGTGAAAGACATGATGACATTCCTGATAGGAACTCAAGATCACATTCATTAGACAATCACAGAGTTAGACTCAAGCAGACAGGGGATATTATGAAGTGTGCAAATGAAAGGGAAATTTCAAAAGAGGAAACAGAAATACAAACAGGATCTTTCAGGCATGAATTAGATGACAATATATTGCTCCAGAGGGAGTTGTCTCCCAGGAACCTTGTAAGATCCTTGTCTGCTCCTGTATCAGTATCAGGAACATCATTTGGGAAGCTTCTTCTAGAGGACCGCCACATTTTAACTGGTGCTCATATTAGGAGGAAGCTTGAAGCCGTTGAAACTATGTCTGTTGGTGTTAAAAAACGGAAAAAAGATAGATTTAATATTAGAGAAAGGGTCTCCAATTTTAGATATAGTCTTGCTCTAAGAGGGAAGCTTTTTGGCAAAAGGAGTCAATCAATGGTAGAATCACATGGCAATGAATATGGTCCTGTGGTGAGTGATGTCACAAGTGGACCAACAGTTCTTATGAACTATGGTGAGAGGCATGAGAACTCCACTGAAGTACCTCCAAGTCCTGCATCTGTATGCAGCAGTGTTCATGAAGACTTTTGGAGGCGGACTGAATATTTAAGTCCAATATCAACCCCTGATGTGCCTTCAAGAGACGATATTGTTGTGCCCCAGGTTTTTAGAGATATCAGCTCTGGTTTGAACGAGCTAAGAAGACAACTCAATCAACTTGAATCTGATGTTCTTGAGGACTTCACTACGAAACAGGAGCCCGTTGAGTCTGGATTAGTTCAATTAGAGGATCCAGCAGAATCTTACATAAGAGATCTACTTGTTGCTTCTGGTCTGTACTTTGGTTCATGGGATAAATCCTTATTAAGAGGGGATACATTTGCAAAGCCTATTGGCAACTCTGTTTTTGAAGAAGTGGAAGAATCTCATAAGAAATTAGTCAAGGAGAATGATGAAAGACCTATAAAGGATCAGAATGAGAATAAGCTAGACCACAAGATTTTGCTTGATTTGTTAAATGAGGCACTTTCAGTTGTTCTTGGACCACCTTTGACATTGACTAGATTCAGAAGGAAATTAAGCAACTCTTCCATGTTGCCACCACCTTGTGGGAAGGAACTGTTGAACTCAGTATGGGACATTATCCGTGTTTCTTTATATCCTCCATCTGACATATCTTCTTATTCACTTGATGGTTTGGTGGCTCAACACTTGAGATGCATCCCCTGGTCCGGATTAATAAATGATGAGATCAATATATTGGAAAGAGAGATAGAATGTCTTATAACTAATGATCTAATTGAAGAACTCACAAAGGACATGCTCTAA 2673 0.3988 MGGLLHFFEFNQGRMAKKVHAHKRHHGGLEAPRNSVDMQVETSQNFCSQGELPYYYQVEEDGSENNHYSNAGSMKKLINEELSKRSSTRQNAPSLVARLMGIDMMPLDTKSVAPSDKRVSENIGKKFSNKGINGRGSVSWESSNFNSSSQMEFDSFYEDTDDDDGWNRSFGEPRPREHPQEEELQKFRKEFEAYQAARFLECSKVADIDSVSRRLLVQENLNKEKLPHNTSLPRAATGKFAGLDTPLFKTELPDSGGSEYCGDTMELIPAMQKKTFPSKSRTLSRDFEESLMMKSYNRLDICSSPPRIVILKPGPDSICNHEENWTSSSGTLTGRNSIEDFLEEVKERLKSELQGKTVKKGSVVRGSEIETLYNKKPSDPKLIARHIVKQVRESVTRDTDTNMVRSESTRTYKSEMQFNGPSFPEFISRDTRRFLSERLSNIVKSERHDDIPDRNSRSHSLDNHRVRLKQTGDIMKCANEREISKEETEIQTGSFRHELDDNILLQRELSPRNLVRSLSAPVSVSGTSFGKLLLEDRHILTGAHIRRKLEAVETMSVGVKKRKKDRFNIRERVSNFRYSLALRGKLFGKRSQSMVESHGNEYGPVVSDVTSGPTVLMNYGERHENSTEVPPSPASVCSSVHEDFWRRTEYLSPISTPDVPSRDDIVVPQVFRDISSGLNELRRQLNQLESDVLEDFTTKQEPVESGLVQLEDPAESYIRDLLVASGLYFGSWDKSLLRGDTFAKPIGNSVFEEVEESHKKLVKENDERPIKDQNENKLDHKILLDLLNEALSVVLGPPLTLTRFRRKLSNSSMLPPPCGKELLNSVWDIIRVSLYPPSDISSYSLDGLVAQHLRCIPWSGLINDEINILEREIECLITNDLIEELTKDML. 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02172 890 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 889 - -
Seca9g02172 890 Coils Coil 671 691 - -
Seca9g02172 890 MobiDBLite consensus disorder prediction 162 181 - -
Seca9g02172 890 Pfam Domain of unknown function (DUF4378) 716 884 IPR025486 -
Seca9g02172 890 Pfam DUF761-associated sequence motif 90 106 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02172 Seca-Chr9 34104030 34110243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02172 74 889 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 41.065 1.37e-157 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02172 - - gmx:100779720 1380.54