Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02163 ATGGCCCAAGGGACTGATTGCACCTCTCAGACAGTTGTGATGCCTGGTGGTGGGTGCCCCAAAGGGGCTAATAGTGAGTGTTCCATGGAGGATCAGAATGGTGATACTGTGGGAAATTTGAATCAGAATATTGGGAAACCTCCAAGGGATCATTCGGTTATGCGCCATTGTAGCAGCTCTTCATGGTTAGCTGAATCGGATCCAAATATTAATTCTATTGGCCAAAAATCAAGCACTGAGGAAAAATCAGAGTTCTCGATTGTATTGCGATCTGGAAGCTGTTCTGAAAAAGGACCAAAGCAGTACATGGAGGATGAGTTCATATGTGTTGATATTCTTAATGAATGTGTTGGTCCAGAAGCAGACCTTTCTTCTCCAGCAGCATTTTACGGGGTATGTTTCTTCATGTTGAGCATACAGGTATTTGATGGACATGGTGGTGTTGATGCAGCATCATTTACCAGAAAGAACATCCTTAAGTTTATAATTGAAGATTCTCATTTCCCATCTGGGATTAAGAAAGCAGTTAAAAGTGCATTTATAAAGGTTGATCATGCATTAAGAGATGCTAGTGCTCTTGATAGTTCTTCAGGCACCACTGCTCTAGTAGCCCTTGTGCTGGGAAGGGACATGCTAATTGCCAATGCAGGGGATTCTCGTGCTGTATTGGGCAAACGGGGCAGAGCCATTGAACTTTCTAAAGACCATAAACCAAATTGCACTTCTGAGAGATTAAGAATTGAGAAACTGGGTGGTGTCATCTATGATGGATACCTCAATGGCCAACTATCAGTGGCTAGAGCTCTTGGAGATTGGCACATCAAAGGTTCTAAAGGTTCTAAAAGCCCTTTAAGCTCTGAGCCTGAGCTAGAGGAGATTGTGCTGACAGAAGAGGATGAGTTTTTGATAATGGGTTGTGATGGATTATGGGATGTGATGAGTAGCCAGTGTGCTGTTACAATGGTAAGGAGGGAGCTTATGCAGCATAATGATCCCACAAAATGTGCAAAAGTACTTGTTACTGAGGCACTCCAACGCAACACATGTGACAATCTGACAGTTGTGGTGGTTTGTTTCTCCAAAGATCCACCACCAAAAATTGAAATTCCTAGATCACATAGGAGAAGGAGTATTTCTGCTGAAGGCCTTGATCTTCTCAAGGGTGTCTTGAATGGTAGATGA 1182 0.4289 MAQGTDCTSQTVVMPGGGCPKGANSECSMEDQNGDTVGNLNQNIGKPPRDHSVMRHCSSSSWLAESDPNINSIGQKSSTEEKSEFSIVLRSGSCSEKGPKQYMEDEFICVDILNECVGPEADLSSPAAFYGVCFFMLSIQVFDGHGGVDAASFTRKNILKFIIEDSHFPSGIKKAVKSAFIKVDHALRDASALDSSSGTTALVALVLGRDMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPELEEIVLTEEDEFLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPTKCAKVLVTEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSHRRRSISAEGLDLLKGVLNGR. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02163 393 ProSiteProfiles PPM-type phosphatase domain profile. 90 359 IPR001932 -
Seca9g02163 393 Pfam Protein phosphatase 2C 98 351 IPR001932 -
Seca9g02163 393 MobiDBLite consensus disorder prediction 24 52 - -
Seca9g02163 393 SUPERFAMILY PP2C-like 84 360 IPR036457 -
Seca9g02163 393 Gene3D - 71 363 IPR036457 -
Seca9g02163 393 PANTHER PROTEIN PHOSPHATASE 2C 75 357 IPR015655 GO:0004722|GO:0006470
Seca9g02163 393 CDD PP2Cc 90 359 IPR001932 -
Seca9g02163 393 SMART PP2C_4 80 357 IPR001932 -
Seca9g02163 393 FunFam Probable protein phosphatase 2C 22 75 362 - -
Seca9g02163 393 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02163 Seca-Chr9 34052115 34055444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02163 73 391 PP2C-type Phosphatase Gene Family AT3G51470 77.116 1.35e-178 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02163 K14803 - gmx:100786416 617.846