Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02160 ATGATTAAAGTTTGGGTCTTGGCTTCAATGATTCTCTACAATGGTTTCCTTTCAACTGGGACTGGCATGAATAATTCCACAAGACCTGATTTTGTAAATATTGGGGCTCTCTTCTCCTTCAATACCACTGTTGGTAGAATTATAAAAATTGCTATAGAAGCTGCAGTTGAAGATGTAAATTCGGATCCAAATATTCTTGGCAAGACCAAGCTGAAGCTCTCACTTCAAGAAGATTCTAAATACAGAGGTTTTCTAAGCATTGCTGAGGTTTTGCAGGTCATGGCAAGACACACTGTGGCAATAATTGGCCCCCATAGCTCTGTGACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTGTCATTTTCAGCTCTGGATCCCACACTTTCCTCACTTCAATTCCCATTCTTTATTAGAACTTGTCATAGTGATCTTTATCAAATGGCTGCAATAGCAGACCTTGTTGACTACTATGGATGGAAAGAAGTTATTGCTGTCTATATTGATGATGATAATGGGAGGAATGGGATTGGTGCATTAGGTGATAAGCTTGCTGAGAGACGTTGCAGGATCTCATATAAAGCGCCTTTGAGCCCGGAAGCAACTCGGGAGGAGATTACAAATGTGCTTGTTCAAGTGGCACTTGCAGAATCACGGGTCATAGTTGTTCATGCCAATACTTTATGGGGCCCCAAGGTGTTTAGTGTTGCAAAGAATCTTGGGATGATGGGAACTGGTTATGTCTGGATAGCAACTGCTTTTCTCTCTGCTCTGCTTGATATAAATAATCCCCTCCCTTCAGATGCAATGGATGACATTCAAGGAGTTTTAACACCACGTGTGTACACACCAGATTCAGAGCTCAAAAGAAGGTTTGTTTCTAGGTGGAAAAACTTGACTCGTGGGAATACTGCTAATGGCCCCCTTGGATTGAGTTTTTTATCTCTTTATGCTTATGATACTGTTTATGTGCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACCAAATTACATTCTCAAATGATTCAAAGTTATCTGTATTACATGGAGACAACTTGCATCTTGATGCCTTGAACATCTTTGATGAAGGGAATTTGTTACGTAGAAACATTTATGATGTTAACATGACTGGTGTAACAGGAACATTCAAGTATACATCTGATGGAAGCCTTGTTAATCCTGCATATGAAATCATCAATGTGGTTGGAACTGGGTCTCGTAGGATTGGTTATTGGTCTAATTACTCTGGATTAACAGTTGTTCCCCCAGAATCTCTTTATTCCAAACCAGCCAATCGTTCCAGGGCAAATCAGAAGCTATTCCCTGTGATTTGGCCTGGAGATACAGACCAAAAGCCTCGTGGTTGGGTTTTTCCAAACAGTGGAAGGCTTTTAAAAATTGGAGTACCAAAAGGTGTCAGTTATCGTGAATTTGTCTCACAAATACCAGGCACTGATACATTTCAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTTAACCTTTTGCCTTATGCAGTCCCTTATAAGTTTATCCCATATGGGGATGGTAAGAACAATCCTAGTATCACTGAGCTTGTCCGTCTGATCACAACGGGTGTGAGTATCATGCCAATAATCTTTTGTGGAGTTTGGATGTTTTGTGGTAATCTTCTGAGACCGGTTTTGTTCTTCCTATACAGGAATTTGATGGTGCAGTAG 1722 0.4059 MIKVWVLASMILYNGFLSTGTGMNNSTRPDFVNIGALFSFNTTVGRIIKIAIEAAVEDVNSDPNILGKTKLKLSLQEDSKYRGFLSIAEVLQVMARHTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMAAIADLVDYYGWKEVIAVYIDDDNGRNGIGALGDKLAERRCRISYKAPLSPEATREEITNVLVQVALAESRVIVVHANTLWGPKVFSVAKNLGMMGTGYVWIATAFLSALLDINNPLPSDAMDDIQGVLTPRVYTPDSELKRRFVSRWKNLTRGNTANGPLGLSFLSLYAYDTVYVLAHALDAFFKQGNQITFSNDSKLSVLHGDNLHLDALNIFDEGNLLRRNIYDVNMTGVTGTFKYTSDGSLVNPAYEIINVVGTGSRRIGYWSNYSGLTVVPPESLYSKPANRSRANQKLFPVIWPGDTDQKPRGWVFPNSGRLLKIGVPKGVSYREFVSQIPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSITELVRLITTGVSIMPIIFCGVWMFCGNLLRPVLFFLYRNLMVQ. 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02160 573 PANTHER OS06G0188250 PROTEIN 7 410 - -
Seca9g02160 573 Gene3D - 148 425 - -
Seca9g02160 573 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Seca9g02160 573 Gene3D - 50 400 - -
Seca9g02160 573 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Seca9g02160 573 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Seca9g02160 573 FunFam Glutamate receptor 148 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02160 Seca-Chr9 34024540 34027199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02160 5 541 Ion Channels AT3G51480 54.562 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02160 K05387 - gmx:100793320 932.939