Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02159 ATGGTGGATTTTACTCAGCCATATATTGAATCTGGTCTAGTGGTAGTAGCCCCAGTTAAGGAGTCAGAAACCAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGGATGTGGCTTGTCACAGCTATCTTTTTCATATTAGTGGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAGTTTAGGGGACCACCCAAAAAACAAGTAGTTACTATTTTATGGTTTAGTTTTTCTACTATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGCTGCTTATATGGCTTTTTGTAGTTCTGATAATTAACTCAAGTTACACAGCAAGCCTAACCTCAATCCTCACAGTGCAGCAGCTTTCTTCCCCCATTAAAGGCATTGAAAGTTTAGCAAATAGCAAAGAACCCATCGGGTACACACAGGGTTCATTTGCTAAAAATTATTTAATTCAGGAAATTGGTATTGATGAGTCAAGACTTGTTCCTTTAAGAACACCAGAAGAATCTGCTAGAGCACTGAAAAAGGGTCCCCAAAATGGTGGCGTTGCTGCTTATATTGATGAGCGTGCCTACATTGACCTCTTCCTTTCAAGCCAGTGTGAACTTACTGTTGTAGGTCAAGAGTTCACAAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCACCATTAGCAGTTGACCTGTCAACTGCCATTTTGCAATTAACAGACAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGTAGAGCTTGCATATCACAAGGTGCAAAGCTTGAAAGACTCAAACTAAAAAGCTTCTGGGGCCTTTATGCAATCTGTGGATCTGCCTGTCTGCTTGCTCTATTCATATATCTTATACAGATAATTAGGCAGTACAGCAAGCACTACTCTGAGGAACATGTGTTTAGTGATCAAAACTCTGGATCAGGATCTTCACGTATACGGACTTTCCTTTCATTTGCGGATGAAAAAGAAGAGACAGTTAAGGACCGCGCAAAGAGAAGGAAAATGGAGAGGATCTCATACAGAGGCAATGAGGGAGGATCATCCATCAACTCCAATAAAGACTATGCTCAGTCTTCATACAGAAGTGATTGTGGTAATGAAGTCTGA 1140 0.4105 MVDFTQPYIESGLVVVAPVKESETSALAFLAPFTPRMWLVTAIFFILVGTVVWILEHRVNDEFRGPPKKQVVTILWFSFSTMFFSHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLANSKEPIGYTQGSFAKNYLIQEIGIDESRLVPLRTPEESARALKKGPQNGGVAAYIDERAYIDLFLSSQCELTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQLTDNGDLQRIHDKWLLSRACISQGAKLERLKLKSFWGLYAICGSACLLALFIYLIQIIRQYSKHYSEEHVFSDQNSGSGSSRIRTFLSFADEKEETVKDRAKRRKMERISYRGNEGGSSINSNKDYAQSSYRSDCGNEV. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02159 379 Gene3D - 21 157 - -
Seca9g02159 379 Gene3D - 222 254 - -
Seca9g02159 379 Gene3D - 174 221 - -
Seca9g02159 379 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 328 IPR015683 -
Seca9g02159 379 FunFam Glutamate receptor 152 259 - -
Seca9g02159 379 MobiDBLite consensus disorder prediction 354 379 - -
Seca9g02159 379 MobiDBLite consensus disorder prediction 341 379 - -
Seca9g02159 379 FunFam Glutamate receptor 26 156 - -
Seca9g02159 379 Pfam Bacterial extracellular solute-binding proteins, family 3 2 255 IPR001638 -
Seca9g02159 379 Pfam Ligand-gated ion channel 256 285 IPR001320 GO:0015276|GO:0016020
Seca9g02159 379 SMART GluR_14 46 257 IPR001320 GO:0015276|GO:0016020
Seca9g02159 379 SUPERFAMILY Periplasmic binding protein-like II 2 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02159 Seca-Chr9 34021170 34024507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02159 1 354 Ion Channels AT3G51480 65.266 6.59e-169 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02159 K05387 - gmx:100793320 612.453