Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02158 ATGTCAGTAGCTGAGTTTAAGGCTGTATTAGTTTGTCAGTATAATGAAAATTCTTCTGGTAGGACTTCATTTGATGTGGAAGGTGAGCATAATGAAAATCCTTCTGGTAGGACTTCATTTGATGTGGAAGGTGAATATGTTTTTGAAAGTGACAGTGTCTTGGATTTTGCTATGCCATATGCATGTCAAGACAGAAAACTGAAAGAAGTCTATCGCCAGCGGAAGAATTTTCAGTTAGAACCTGAAAAATTATCTGGGAGTTATCAAGAGAATGATATGCTTCCAATGCCTACTCCAAATCTTATGCTTCCATCACAGCCTGATATTGATAGATTCATCCCTGATCATGATGGTAATAAAATGCTTCCTGTGACCGTGCCAAATTCTTTGCAGCCAGAAATCGGCTTCTATGACAGTAAAAGGATGATTGAATGGCCAGCAGAACGTGTCATATTGGTTATGGTTCTCGTTGCTTTCACTTTGATCTTCTACGGGCTTCTAGGGGTTAAAAATCAAGATAAATTGAAGAACCAAATTAGTGAACCATATTTAAAAATCCCACCTCCTAAGAAAAAGAGAGCACGTAAGTCAGGAAAAAACAATATCATTGTTGACAAACAGGATAAGAACCTGTCATCAACAGACGAGGATATACTGACACATAAGGAAACTGAAAGTGAAGCAGGGTTGAACTTGTATAAAGTTGATGGACGAAGGATTGGTAAACTATCTGTATCAAATAAAGAAATTGCTAAGGGAAGCAATGGTACCATTGTCCTTGAGGGGATATATGAAGGCCGGGCAGTTGCTGTCAAACGTCTTGTCCAGGCTCATCATGATGTAGCTCATAAAGAAATCCAAAATCTCATTGCATCTGACTTTCATCCAAACATTGTCCGATGGTATGGGGTGGAATATGATCAAGATTTTGTTTACCTTGCTCTGGAGCGTTGTGCATGCAACTTGGATGATTTGATTCATGTCTATGCGGATATATCAGAAAACCCCATGTTTAGCGAGAAGCAAGCTTTTAAATTTTTCAAGAAGGTTCAGATGGAGACAGGGAGGGATGGTATACAATATCTTTGGAAAGCAAATGGTTATCCATCACCTCTATTACTGAAACTGATGAGGGATGTAGTTTCTGGGCTTGTTCATTTGCATGAACTAGGAATAATACATCGGGATTTGAAACCGCAAAATGTTTTGATAATCAATGAAAGATCATTATGTGCCAAGCTTTCTGATATGGGGATTAGCAAACGCCTTCTTGAAGATATGTCTTCTTTGGGTCATAGTACTACTGGCTGTGGTAGTTCAGGTTGGCAAGCACCAGAGCAACTTGTTCAAGGACGCCAAACACGGGCAGTAGATTTATTTAGTTTAGGTTGTGTCCTCTTCTTCTGTATGACTGCAGGGAGACATCCATTTGGAGAACGTCTTGAGCGTGATGTCAATATTGTGAAAAATAAAAAAGATCTTTTCTTAGTGGAGTTCATGCCTGAAGCTGAAGATCTTATTTCTTGTTTATTACATCCTGACCCTGATCTAAGGCCAAAGGCGATTGAAGTATTGCACCATCCTCTTTTTTGGAGTTCTGAGATGAGACTTTCATTTCTTCGTGACGTCAGTGATAGGGTGGAACTTGAAGATAGAGAGACTGATTCTGATATTTTGAAGGCATTAGAAAGCATTGCTCCAGTGGCTTTAGGTGTAAAATGGGATGAAAAGTTGGAACCAGCATTCCTTACTAACATTGGTCGTTACAGGCGATATAAATTTGACAGTGTTCGGGACTTGTTGAGGGTCATGAGAAACAAGCTAAATCATTATAGAGAATTGCCTCAAGAAATCCAGGTTTTTTCTTGGATGCTAATTTTCACAATTCTTTATTATTATTTGTTTCTGTTTTTACTCTAG 1920 0.3875 MSVAEFKAVLVCQYNENSSGRTSFDVEGEHNENPSGRTSFDVEGEYVFESDSVLDFAMPYACQDRKLKEVYRQRKNFQLEPEKLSGSYQENDMLPMPTPNLMLPSQPDIDRFIPDHDGNKMLPVTVPNSLQPEIGFYDSKRMIEWPAERVILVMVLVAFTLIFYGLLGVKNQDKLKNQISEPYLKIPPPKKKRARKSGKNNIIVDKQDKNLSSTDEDILTHKETESEAGLNLYKVDGRRIGKLSVSNKEIAKGSNGTIVLEGIYEGRAVAVKRLVQAHHDVAHKEIQNLIASDFHPNIVRWYGVEYDQDFVYLALERCACNLDDLIHVYADISENPMFSEKQAFKFFKKVQMETGRDGIQYLWKANGYPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLIINERSLCAKLSDMGISKRLLEDMSSLGHSTTGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNKKDLFLVEFMPEAEDLISCLLHPDPDLRPKAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRETDSDILKALESIAPVALGVKWDEKLEPAFLTNIGRYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQVFSWMLIFTILYYYLFLFLL. 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02158 639 ProSiteProfiles KEN domain profile. 533 639 IPR010513 GO:0004540|GO:0006397
Seca9g02158 639 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 356 532 - -
Seca9g02158 639 Gene3D KEN domain 533 636 IPR038357 -
Seca9g02158 639 Gene3D Phosphorylase Kinase; domain 1 231 316 - -
Seca9g02158 639 Gene3D Transferase(Phosphotransferase) domain 1 363 532 - -
Seca9g02158 639 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 236 316 - -
Seca9g02158 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Seca9g02158 639 SMART serkin_6 244 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02158 639 SUPERFAMILY Protein kinase-like (PK-like) 248 545 IPR011009 -
Seca9g02158 639 Pfam Ribonuclease 2-5A 536 625 IPR010513 GO:0004540|GO:0006397
Seca9g02158 639 ProSiteProfiles Protein kinase domain profile. 244 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02158 639 Pfam Protein kinase domain 247 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02158 639 PANTHER IRE1-RELATED 194 621 IPR045133 GO:0004521|GO:0004674|GO:0030968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02158 Seca-Chr9 34014623 34020850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02158 268 529 MAP Kinase Kinase Kinase AT3G06030 27.068 1.93e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Seca9g02158 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02158 K08852 - gmx:102661527 843.573