LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g02153	CACGTGCAATTGCGTCCATTGCGTTCAGGAGCTCTCAAAGAAGTTGGCACGGAATTAAGCAATGTTCTAGCTGTCCCACCTCTAATTTCCTCTTCATTGTCCCAAAAACTTGAGAAGTTAAGAGAAAGGCAGTGTAGAGTCTTCATTGTCCATTTGTCCCTTCCTTTGGCACTACACATGTTTGAAACTGCAAACAAAATGAATATGAAGGAGGAAGGTAATGTATGGATTACTACTAGTACCATCACAAGCCTTGTTCATTCCTTGAATGGCTCAGGCAATGAGGGAAACCAACCAAACAGGGATCAACTTTTGCTAGATAAGATTTTGCTAAGTAATTTCACTGGCTTAAGTGGAAAAATTCAGTTCAATGACCATAAAATAGCTCCAGCACATACTTTTCAGATCATTGGTGTGATTGGGAAGAGCTACAGGGAAATTGGGTTCTGGTCAGATGGACTTGGTTTCTCAAAAACTTATGGAAAAAATGCTTCTTACAGTTCTTCGGTGAAGGAATTGGGAAAAGTGGTTAATCCAATATGTGCTAAACGACTAAGAATTGGTGTCCCCTCTTATGCAACATTCAAACCATATGTCGATGTTATTCAAGATGACTCTCAAAGTGCTCCCTCCTTCAAGGGAATTGTTATAGATCTTTTCAAAGAAATAGTAAAACAATTACCATACCATTTGGAATATGATTTCTTTGCCTTCAATGGCACACATGATGAATTGGTGAAGCAAATTTATTTGAAGAAATATGATGCAGTTGTTGGTGATGTAACAATAGAGTCCGCGCGTTATGAATATGCTTCATTCACTCAGCCCTATACTGATCCAGGAATGGTGATGATTGTTCCTGTTCAATCAGAAATAGGCAACAGAGCGTGGTTATTCATGAAGCCTTTCACAAAGCTAATGTGGATTCTAATTTTGGTCATCATTGTCTACAATGGCTTTGTTGTATGGATGATTGAAAGAAACCACCGCCCAGAACTTAGAGGTCCTATTCTGCATCAAACGATAATTGTACTGTGGTTGGCTTTCATTTCTCTGTTCTCTCTGAATGGTAATTCTGTTCTGCCTTGA	1089	0.3903	HVQLRPLRSGALKEVGTELSNVLAVPPLISSSLSQKLEKLRERQCRVFIVHLSLPLALHMFETANKMNMKEEGNVWITTSTITSLVHSLNGSGNEGNQPNRDQLLLDKILLSNFTGLSGKIQFNDHKIAPAHTFQIIGVIGKSYREIGFWSDGLGFSKTYGKNASYSSSVKELGKVVNPICAKRLRIGVPSYATFKPYVDVIQDDSQSAPSFKGIVIDLFKEIVKQLPYHLEYDFFAFNGTHDELVKQIYLKKYDAVVGDVTIESARYEYASFTQPYTDPGMVMIVPVQSEIGNRAWLFMKPFTKLMWILILVIIVYNGFVVWMIERNHRPELRGPILHQTIIVLWLAFISLFSLNGNSVLP.	363

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g02153	362	Gene3D	-	295	357	-	-
	Seca9g02153	362	SUPERFAMILY	Periplasmic binding protein-like I	13	151	IPR028082	-
	Seca9g02153	362	Pfam	Bacterial extracellular solute-binding proteins, family 3	210	290	IPR001638	-
	Seca9g02153	362	Gene3D	-	6	179	-	-
	Seca9g02153	362	Gene3D	-	180	294	-	-
	Seca9g02153	362	FunFam	Glutamate receptor	181	295	-	-
	Seca9g02153	362	SUPERFAMILY	Periplasmic binding protein-like II	182	314	-	-
	Seca9g02153	362	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	11	350	IPR015683	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g02153	Seca-Chr9	33978465	33979978	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g02153	11	352	Ion Channels	AT2G24720	30.728	1.17e-45	165

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g02153	-		-	gmx:100776939	414.461

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