Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02150 ATGACACGAACGCTTAGAATTCTCCAATCAACGGACAACGTCACCGCCGTCGGTTCAGTCGCGCCGCCGCCGGAGCCGGTGGCCTTGGAATCGGATTTCGTCGTCATCCTTGCGGCGCTTCTCTGCGCTCTGATATGCGTTGTAGGACTCATCGCCGTCGCAAGGTGCGCGTGGCTCCGGCGAGGTACCGGCGCCGGCGGGAATTCCCCTCGGCAAGCGTTGGCGAACAAAGGCCTGAAGAAGAAGGTGCTCCAGTCGCTGCCGAAGTTCGCTTACGTCGACAGCAACCCTAGCAAGTGGTTGGCTACATCTGAATGCGCGATTTGCCTGGCGGAGTTCACCGCCGGCGACGAGATCCGTGTGCTGCCGCAGTGCGGACATGGATTCCATGTGGCCTGCATAGACACGTGGTTGGGGTCACACTCGTCGTGTCCTTCTTGTCGGCAGGTTCTGGCGGTGGCGAGGTGCCAGAAGTGTGGCCGGTTCCCACCGGCGGCAGGTACTAGCGGCGGAGCCACCAGCACGGCGGTTAGTGAACCAGAATTGAAGTCCAGAGAAGACGACAATGCCGCTGCAAATAATAATAGTAACAATAATAATGGCGGTTTTGTAAGTGTTACTGTTAGTGGTAGCAGTAACAGTGAACATCACAGCCACAATGGAAACAGTGGGTTCTTACCATGA 684 0.5731 MTRTLRILQSTDNVTAVGSVAPPPEPVALESDFVVILAALLCALICVVGLIAVARCAWLRRGTGAGGNSPRQALANKGLKKKVLQSLPKFAYVDSNPSKWLATSECAICLAEFTAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQVLAVARCQKCGRFPPAAGTSGGATSTAVSEPELKSREDDNAAANNNSNNNNGGFVSVTVSGSSNSEHHSHNGNSGFLP. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02150 227 MobiDBLite consensus disorder prediction 189 227 - -
Seca9g02150 227 FunFam E3 ubiquitin-protein ligase ATL6 68 154 - -
Seca9g02150 227 SMART FANCL_C_2 102 156 - -
Seca9g02150 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Seca9g02150 227 SUPERFAMILY RING/U-box 84 153 - -
Seca9g02150 227 CDD RING-H2_EL5-like 105 148 - -
Seca9g02150 227 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Seca9g02150 227 Pfam Ring finger domain 105 148 IPR001841 -
Seca9g02150 227 SMART ring_2 106 147 IPR001841 -
Seca9g02150 227 MobiDBLite consensus disorder prediction 165 227 - -
Seca9g02150 227 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 28 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02150 Seca-Chr9 33950021 33950704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02150 28 159 C3H Transcription Factor Family AT1G20823 69.504 1.94e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02150 - - gmx:100787383 325.094