Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02133 ATGAGTGATGTAAAAGAGAACGAGGAAGCTGGCCAGGCCGTGCCCTCGGCTATAGAAGAAAACCAGCAGTTGGTTGATGAACAGGTTGAAGTTCAACCTGAAGTTGCCTCTGCTCCTGTTACAGTAGAGGAAACATCAAATAATGTTGAAAATGGGTCAAATCATGTTGAAAATGGATCAAATGTTGTTGAACATGAGAAGTCTGAGCCTCCTACTGAGGATAAAAATGTCAAACTTGAGGCTGTTTCTGAAGACATGCCACAAGCAGATGTTCAGGATAGTCTTCACTCAGTCCCAGTAGAGGCTGATGCTCTGGTTTCAAATACAACTGAGTGTAAAGCTTCTCCTGATGCGAAGATGGAAGCTGAAGAATGTCCTCAAAGTAGCAAGGGTGTTGAAAATGGTGATAATGTTCATCAACATATTGTTGCTGATGCTGAAAAAGTGGTGGAGGTGAAGCCTGAAGTTTGTGAAGTGGCTGATGGTATAACTCGTGAGAATGGTGATCCCATGCCCTCAAGTGATAATGATCCTAGTCCTACTCTGCCGCAACCTGCCCCTGCTGATACAGAACTTGAAATCAAGAACGTAATAGAAGTTGAGAATAAGGCTGATGAAAAGCAAGCTACTGAACCTGCAGACAATGGGAATTCAAACTCAAAGCACTTGTTTTTCTTGGATGCTGATCATTCTTATGATGGTAATGAGTCAGGAACAGAGGAGGACCAATCAGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTTTATGGAGAAGGACTTAATTGCCTTAAGTTATGGAGAGCTGTAACAAGATTGGGTGGCTATGATAAGGTAACGTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACGACAGTTTCATGGACTTTTCGTGGATTTTATGAGAAGGCCCTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTAAATGTGCCTATTGTTTCTCAACCAGAGCCGATGAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTGGCAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATCCCGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAACGTAAGAAACCGTCTTATATGGATAATGCAGTCAAAGCAGCACGCAGTAAACCATCTAAACCACAATTGGATACAGCTGTCATTGATGTTGGACCTCCTGCTGATTGGGTAAAAGTAAATGTACAAAAAACTAAAGATTGTTTTGAAGTATATGCTTTAGTTCCTGGTCTTCTGCGGGAAGAGGTACTATACATTCTGGTTGTTTTATTTTTCTTTTATCTGCATAATGATGAAAATTAA 1467 0.4158 MSDVKENEEAGQAVPSAIEENQQLVDEQVEVQPEVASAPVTVEETSNNVENGSNHVENGSNVVEHEKSEPPTEDKNVKLEAVSEDMPQADVQDSLHSVPVEADALVSNTTECKASPDAKMEAEECPQSSKGVENGDNVHQHIVADAEKVVEVKPEVCEVADGITRENGDPMPSSDNDPSPTLPQPAPADTELEIKNVIEVENKADEKQATEPADNGNSNSKHLFFLDADHSYDGNESGTEEDQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPIVSQPEPMNIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNPVSVQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVIDVGPPADWVKVNVQKTKDCFEVYALVPGLLREEVLYILVVLFFFYLHNDEN. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02133 488 FunFam AT-rich interactive domain-containing protein 3 240 339 - -
Seca9g02133 488 MobiDBLite consensus disorder prediction 1 22 - -
Seca9g02133 488 CDD ARID 242 327 - -
Seca9g02133 488 SMART bright_3 241 332 IPR001606 GO:0003677
Seca9g02133 488 MobiDBLite consensus disorder prediction 39 59 - -
Seca9g02133 488 Pfam ARID/BRIGHT DNA binding domain 243 327 IPR001606 GO:0003677
Seca9g02133 488 MobiDBLite consensus disorder prediction 60 75 - -
Seca9g02133 488 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 70 471 IPR045147 GO:0006357
Seca9g02133 488 MobiDBLite consensus disorder prediction 159 187 - -
Seca9g02133 488 MobiDBLite consensus disorder prediction 111 137 - -
Seca9g02133 488 SUPERFAMILY ARID-like 235 340 IPR036431 GO:0003677
Seca9g02133 488 ProSiteProfiles ARID domain profile. 240 331 IPR001606 GO:0003677
Seca9g02133 488 SMART ARID_2 237 327 - -
Seca9g02133 488 MobiDBLite consensus disorder prediction 35 75 - -
Seca9g02133 488 Gene3D - 240 337 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02133 Seca-Chr9 33623576 33630520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02133 224 471 ARID Transcription Factor Family AT1G76510 60.079 9.50e-92 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca9g02133 ARID 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02133 - - gmx:100791081 704.901