Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02116 ATGCCACAAAACTACATAGCACCAAAACCAGAATACTGTAGTAGTCACTCTGTGGAAGTACCACCAGAGATGACTGAACCCCATAACTCAAGTGTCCTTGCCTACCCCTCCATACGAACCAATGAACAATCTTTACCAAAACTCATTATGTACCCCATAGTTTTGAAGTTTGAGGAACTGGTGTACAAAGTTAAACTAGAGCAAAAAGGGTCATGTTGGGGCAGTACATGGAGTTGCAAAGAGAAGACCATACTGAATGGGATCACAGGTGTGGTATGTCCAGGAGAAATACTAGCTATGCTGGGCCCATCAGGTAGTGGAAAAACCACACTTCTTACAGCTCTTGGAGGCCGTCTCAGTGGTAAACTATCTGGAAAGATCACATACAACGGTCAGCCTTTCTCAGGTGCCATAAAAAGAAGAACAGGTTTTGTGGCTCAAGATGATGTGCTATACCCTCATCTCACTGTCAGTGAAACTCTAATGTTCACTGCACTACTGAGGCTACCAAACAGTTTGACCAGAGAAGAAAAAGTTGAGCATGTAGAGAGAGTAATCACTGAGTTAGGACTGACTCGTTGCAGGAACAGCATGATAGGAGGCCCACTTTTGAGAGGAATATCAGGTGGAGAGAAAAGGAGGGTGAGCATAGGCCAAGAGATGCTCATCAATCCTAGCCTCTTGTTGCTAGATGAGCCCACTTCAGGTTTGGATTCCACCACAGCATTAAGGATCCTAAACACCATCAAACGCCTAGCAAGTGGGGGAAGAACTGTTATCACCACCATTCATCAACCTTCTAGTCGCCTCTACTATATGTTTGACAAGGTGGTCTTGCTCTCTGAAGGCTGTCCTATCTATTATGGTCCTGCTTCAACTGCTCTTGAGTACTTTTCATCTGTTGGTTTTTCCACATGTGTGACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAACGGGATTGGCCCGGACTCCAAGCATGTAACTGAACAAAGTGAGGGCCTGGAACAGGAGAGGAAGATGGTGAGAGAATCTCTCATCTCTGCTTATGAAAAGAACATAGCTACAAGGCTGAAAGCTGAAGTTTGCAGCCTGGAGGTGAACAACTACAACATCACAAAAGATGCTTGCACAAGTAGGTCTTCTATCTTTTTAAGGGAAAAACAATGA 1173 0.4459 MPQNYIAPKPEYCSSHSVEVPPEMTEPHNSSVLAYPSIRTNEQSLPKLIMYPIVLKFEELVYKVKLEQKGSCWGSTWSCKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGQPFSGAIKRRTGFVAQDDVLYPHLTVSETLMFTALLRLPNSLTREEKVEHVERVITELGLTRCRNSMIGGPLLRGISGGEKRRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILNTIKRLASGGRTVITTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALEYFSSVGFSTCVTVNPADLLLDLANGIGPDSKHVTEQSEGLEQERKMVRESLISAYEKNIATRLKAEVCSLEVNNYNITKDACTSRSSIFLREKQ. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02116 390 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 55 307 IPR003439 GO:0005524
Seca9g02116 390 CDD ABCG_EPDR 52 289 - -
Seca9g02116 390 Pfam ABC transporter 86 235 IPR003439 GO:0005524
Seca9g02116 390 Pfam ABC-2 type transporter 264 344 IPR043926 GO:0140359
Seca9g02116 390 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 36 361 - -
Seca9g02116 390 FunFam ABC transporter G family member 22 72 301 - -
Seca9g02116 390 ProSitePatterns ABC transporters family signature. 207 221 IPR017871 GO:0005524|GO:0016887
Seca9g02116 390 SMART AAA_5 94 284 IPR003593 GO:0016887
Seca9g02116 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 299 IPR027417 -
Seca9g02116 390 Gene3D - 74 301 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02116 Seca-Chr9 33449894 33453978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02116 84 283 Calmodulin-binding Proteins AT2G36910 30.288 2.43e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02116 K05681 - gmx:100794774 682.174