Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02107 ATGGCGGATCGGTTGACGCGTATTGCCATCGTGAGCAACGACAGGTGCAAGCCCAAGAAGTGCCGCCAGGAGTGTAAGAAGAGTTGCCCTGTTGTCAGAACCGGTAGATTGTGTATTGAGGTTACTCCTGCGTCGAAGATTGCTTTCATATCTGAGGAATTGTGCATTGGATGCGGTATTTGTGTTAAGAAATGTCCTTTTGAAGCTATCCAGATCATCAACTTGCCTAAGGACTTGGACAAAGACACCACTCACAGATATGGTCCCAATACTTTTAAGCTGCATAGGTTGCCAGTGCCGAGGCCAGGGCAGGTGCTTGGGTTGGTTGGGACAAATGGAATTGGGAAGTCCACTGCCCTTAAAGTTTTGGCTGGAAAATTGAAACCGAACCTGGGACGTTTCACTAATCCTCCTGATTGGCAGGAAATATTGACCTATTTTCGAGGATCTGAACTGCAGAATTACTTCACTCGTATTCTAGAGGATGATTTGAAGGCTATCATCAAGCCTCAGTATGTTGACCACATTCCAAAAGCAGTACAAGGAAATGTGGGGCAGGTGCTAGACCAGAAAAATGAGAGAGATATGAAGGCCGAGCTTTGTCATGATCTTGAGCTTAATCAGGTTATAGATCGTAATGTAGGTGACCTTTCAGGTGGTGAGCTTCAAAGGTTTGCTATTGCCGTTGTTGCCATCCAAAATGCAGAGATATACATGTTTGATGAACCTTCTAGCTATCTTGATGTGAAACAGAGGCTGAAAGCTGCCCAGGTTATTCGATCATTGCTTAGGCCTAATAGGTTTGTGCCCTTTTCTCTCAGTAGTGTCTGCCTTAAACCTTGCCTATATCACGTAATTGTTGTAGAGCATGATCTTAGTGTCTTGGACTACTTATCAGACTTTATTTGCTGTTTATATGGCAAACCTGGTGCATATGGAGTGGTAACACTTCCTTTCTCAGTCAGAGAAGGAATTAACATCTTCTTGGCTGGCTTTGTTCCAACAGAAAATCTTAGGTTCCGTGATGACTCTCTTACCTTCAAGGTTGCTGAGACTCCGCAGGAAACTGCTGAGGAAGCACAGACATATGCTCGATACAAATACCCAACCATGACCAAAACTCAAGGCAATTTCAAGCTTCGTGTAGTTGAAGGAGAATTTACTGATTCCCAGATTATTGTGATGCTGGGTGAGAATGGGACGGGAAAGACAACATTTATTCGCATGCTGGCTGGTTTATTGAAACCTGACACTGTAGAAGGTGGATCTGATGCAGAGATGCCTGAGTTTAATGTTTCATACAAGCCTCAGAAGATTAGCCCGAAGTTCCAATCAACTGTTAGACACTTGCTACATCAAAAAATCCGTGATGCCTATACCCATCCTCAGTTTGTATCAGATGTGATGAAGCCACTTCTTATTGAACAATTAATGGACCAAGAAGTTGTGAATCTTTCTGGTGGAGAGTTGCAAAGAGTTGCCTTGTGTCTTTGTCTCGGAAAGCCTGCAGACATCTATCTGATAGATGAGCCAAGTGCATATCTTGATTCTGAACAGCGAATTCATGCTGCCAAAGTCATTAAGAGGTTTATTCTTCATGCAAAGAAAACGGCTTTTGTGGTGGAGCATGATTTCATCATGGCAACATATCTTGCTGACAGAGTTATTGTTTATGAGGGTCAACCTTCAATCGATTGTACTGCAAATTCTCCACAATCATTGTTGACTGGGATGAACCTTTTCTTATCTCATCTTGATATCACATTTAGAAGAGACCCAACTAATTTTCGCCCAAGGATCAACAAAGTTGATTCAACCAAGGACAGAGAACAGAAGGCTGCTGGGTCTTACTATTATCTTGATGACTGA 1869 0.4286 MADRLTRIAIVSNDRCKPKKCRQECKKSCPVVRTGRLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFTNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVQGNVGQVLDQKNERDMKAELCHDLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRPNRFVPFSLSSVCLKPCLYHVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQETAEEAQTYARYKYPTMTKTQGNFKLRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTVEGGSDAEMPEFNVSYKPQKISPKFQSTVRHLLHQKIRDAYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSIDCTANSPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKVDSTKDREQKAAGSYYYLDD. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02107 622 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 55 66 IPR017900 -
Seca9g02107 622 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 6 37 IPR007209 -
Seca9g02107 622 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 622 IPR013283 -
Seca9g02107 622 CDD ABC_RNaseL_inhibitor_domain1 78 348 IPR034348 -
Seca9g02107 622 SUPERFAMILY 4Fe-4S ferredoxins 6 145 - -
Seca9g02107 622 Pfam ABC transporter 102 244 IPR003439 GO:0005524
Seca9g02107 622 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 585 IPR003439 GO:0005524
Seca9g02107 622 FunFam ATP-binding cassette sub-family E member 1 351 620 - -
Seca9g02107 622 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 46 75 IPR017896 -
Seca9g02107 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 559 IPR027417 -
Seca9g02107 622 ProSitePatterns ABC transporters family signature. 485 499 IPR017871 GO:0005524|GO:0016887
Seca9g02107 622 Pfam 4Fe-4S binding domain 49 71 IPR017896 -
Seca9g02107 622 CDD ABC_RNaseL_inhibitor_domain2 366 615 - -
Seca9g02107 622 FunFam ATP-binding cassette, sub-family E, member 1 1 348 - -
Seca9g02107 622 Gene3D - 1 348 IPR027417 -
Seca9g02107 622 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 331 IPR003439 GO:0005524
Seca9g02107 622 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Seca9g02107 622 SMART AAA_5 389 563 IPR003593 GO:0016887
Seca9g02107 622 SMART AAA_5 102 292 IPR003593 GO:0016887
Seca9g02107 622 Pfam ABC transporter 383 513 IPR003439 GO:0005524
Seca9g02107 622 Gene3D - 353 620 IPR027417 -
Seca9g02107 622 PRINTS ABC transporter family E signature 24 39 IPR013283 -
Seca9g02107 622 PRINTS ABC transporter family E signature 79 99 IPR013283 -
Seca9g02107 622 PRINTS ABC transporter family E signature 52 76 IPR013283 -
Seca9g02107 622 PRINTS ABC transporter family E signature 140 156 IPR013283 -
Seca9g02107 622 PRINTS ABC transporter family E signature 107 132 IPR013283 -
Seca9g02107 622 PRINTS ABC transporter family E signature 156 182 IPR013283 -
Seca9g02107 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 307 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02107 Seca-Chr9 33380465 33387054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02107 97 248 Calmodulin-binding Proteins AT2G36910 29.012 7.89e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02107 K06174 - gmx:100797423 1156.74