Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02092 ATGGTGAGAGGAACGTATTCTCGCCGGTGTGTAGCAACATCAGCTCAGCTAGTCCACAAATTAAAGTTGAACCTAGAAGGATATCAGTTGCATGGGTTCATATCTCCCCATGTTGGCAATCTCTCTCTTCTTAGAAACCTCAACCTTAATAACAATAGCTTCGTTGGAAAAATCCCACAAGAATTAGGTCGGTTATTACAATTGCAACAATTGTTTCTCATCAATAACTCCTTCACAGGGGAGATTCCTACAAACTTGTCAAGTTGCTATAATCTCAAAGTCTTATACTTACGTGGGAATAATTTGATTGGCAAACTACCAATTGAAATTGGCTCTCTTCAAAAGCTTCAACAAATTAGTGTTGCGAAAAACAATTTAACTGGAGGAGTTCCACCATTCATAGGGAATCTTTCATCCCTAACTCTTCTCTCATTGGCTTATAATAACTTAGAGGGAGAAATTCCACATGAAATATGCAGACTCAAAACCCTGACGTATATAGCTGTGGTTGCAGACAAACTGTCTGGCAGGTTTCCTTCTTGTCTTTACAATATGTCAAATCTTACAACAATCTCAGTCGCAAATAACCAATTTGATGGCACTCTTCCACCAAACATGTTCAACACCCTCCCCAATCTCCAATATTTTGGGATTAGCTTCAATCAAATCTCAGGTCTAATCCCCACTTCCTTGGTAAACACTTCAACCCTTACAATACTTGATATCAGCCGAAACCATTTTGTGGGACAAGTTCCAAGTATGGGGAAGCTACAAGATCTTTGGTTTCTACAATTGTCTTTCAACAATCTAGGCGACAATTCAACTAAGGATTTGGATTTTTTGAAATCGTTGACAAATTGTAGTAAGTTGCAATTCTTATCCATATCTGCTAATAATTTTGGAGGTAGTTTGCCAACTTTCTTGGGCAATTTATCCACCAAACTCAGCCAACTATATCTTGGGGGTAATCAGATATTAGGAAAAATTCCTGCAGAATTAGGAAATCTAATCAACTTAACTCTCTTGGCCATGGAAGTGAACCATTTTGAAGGGACTATTCCAGTTACTTTTGGGAAGTTTTCGAAGATGCAGATGTTATATTTGCCCGCGAACAAACTTTCAGGAGATATACCACCCTTCATAAGCAACCTCAGTCAATTGTATTTTTTGAGTTTAGGAGAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAAGAAACTGCCAAAAGTTACAACATCTAGACCTTTCAAAAAACAAACTCAGAGGAACCATACCCGTAGAAGTTTTCACACTTTCCTCTTTGACAAGTTTACTTGACTTGTCACAAAATTCATTGAGTGGCACTCTTCCTCATGAAATCGGCATGCTAAAGAATATTGATATGCTGAATGTCTTTGAGAATCATCTGTCTGGCAATATTCCTGAAACCATTGGAGAATGCATAAGCTTGGAGTACCTTTATTTACAAGGTAATTCCTTCCATGGAACCATACCACCCTCTTTGGCTTCCCTCAAAGGTCTTCGACGTTTAGACCTATCCCGGAATCGCTTGTCTGGATCAATTCCTAAAGATCTGCAAAACATTTCTTTCCTGGAATACTTTAATGTATCTTTTAACATGCTGGACGGTGAGGTTCCAACTGAAGGTGTCTTTCGAAATGCAAGTGAGTTAGCAGTAACCGGAAACAATAAGCTTTGTGGAGGTATTACAGAGTTGCATCTACCGCCATGCCCTGACAAAGGTATGAAACCTGCCAAACACCATAAGTTCAGGTTGATAGCAGTCATAGTTAGTGTGGTTGCTTTTCTTCTCATATTGTTATGTATTCTAACAATCTACTGGATGAGGAAAAGAAACAAGAAGCCATCTTCTGATTCACCAACAATTGATCAGCTAGCTAAGGTTTCATATCAAAACCTACACAATGGAACTGATGGGTTCTCAGCTAGAAACTTGATAGGATCTGGAAATTTTGGCACTGTCTACAAAGGAACTCTTGAATCGGAAGATAGAGTTGTTGCCATAAAGGTCCTAAACCTTCAAAAGAAGGGAGCACACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAATATTAGACATCGAAATCTGGTTAAGATTCTGACATGTTGTTCCAGTACAGATTACAAAGCAGTTCATTATCTTCACTATGAATGTGAGCAACCTATCATTCATTGTGATTTAAAGCCTAGCAATGTGCTTCTTGATGATTGTATGGTAGCTCACGTGAGTGATTTTGGCTTAGCAAGATTGCTCCCAAGTGTTGGAGTCTCTCTCAAGCAAAGTAGCACAATTGGAATAAAGGGGACTATTGGTTATGCGCCTCCAGAGTATGGAATGGGTTCTGAGATGTCAATTGAAGGCGACATGTATAGCTTTGGGATTCTAGCTTTAGAAATGCTAACTGGAAGGAGACCTACAGATGAAATGTTTGGAGATGGTCATAATCTTCATAATTATGTTAAACTTTCAATTTCAAATAACATTTTGCAGGTTGTGGACCCAGCTATTCTCCGCCATGGATTAGATGTGGCTTCTGAAAGTGAGGACCTTGGCATTACGCATCCTAAGATAGAGAAATGTTTACTTTCACTTTTTAGTATTGCACTTGCCTGTTCCGTGGAATCACCGAAAGAAAGAATGAGTATGGTTGATGTCACAAGGGAGATTAATAAAATCAAAACTTTCTTTCTCAGTGGGGTTTAA 2730 0.3861 MVRGTYSRRCVATSAQLVHKLKLNLEGYQLHGFISPHVGNLSLLRNLNLNNNSFVGKIPQELGRLLQLQQLFLINNSFTGEIPTNLSSCYNLKVLYLRGNNLIGKLPIEIGSLQKLQQISVAKNNLTGGVPPFIGNLSSLTLLSLAYNNLEGEIPHEICRLKTLTYIAVVADKLSGRFPSCLYNMSNLTTISVANNQFDGTLPPNMFNTLPNLQYFGISFNQISGLIPTSLVNTSTLTILDISRNHFVGQVPSMGKLQDLWFLQLSFNNLGDNSTKDLDFLKSLTNCSKLQFLSISANNFGGSLPTFLGNLSTKLSQLYLGGNQILGKIPAELGNLINLTLLAMEVNHFEGTIPVTFGKFSKMQMLYLPANKLSGDIPPFISNLSQLYFLSLGENMLEGNIPPSIRNCQKLQHLDLSKNKLRGTIPVEVFTLSSLTSLLDLSQNSLSGTLPHEIGMLKNIDMLNVFENHLSGNIPETIGECISLEYLYLQGNSFHGTIPPSLASLKGLRRLDLSRNRLSGSIPKDLQNISFLEYFNVSFNMLDGEVPTEGVFRNASELAVTGNNKLCGGITELHLPPCPDKGMKPAKHHKFRLIAVIVSVVAFLLILLCILTIYWMRKRNKKPSSDSPTIDQLAKVSYQNLHNGTDGFSARNLIGSGNFGTVYKGTLESEDRVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDYKAVHYLHYECEQPIIHCDLKPSNVLLDDCMVAHVSDFGLARLLPSVGVSLKQSSTIGIKGTIGYAPPEYGMGSEMSIEGDMYSFGILALEMLTGRRPTDEMFGDGHNLHNYVKLSISNNILQVVDPAILRHGLDVASESEDLGITHPKIEKCLLSLFSIALACSVESPKERMSMVDVTREINKIKTFFLSGV. 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02092 909 SUPERFAMILY L domain-like 16 270 - -
Seca9g02092 909 ProSitePatterns Protein kinases ATP-binding region signature. 654 677 IPR017441 GO:0005524
Seca9g02092 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 731 743 IPR008271 GO:0004672|GO:0006468
Seca9g02092 909 ProSiteProfiles Protein kinase domain profile. 648 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02092 909 FunFam LRR receptor-like serine/threonine-protein kinase EFR 279 584 - -
Seca9g02092 909 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 13 278 - -
Seca9g02092 909 Pfam Protein kinase domain 718 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02092 909 Pfam Protein kinase domain 651 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02092 909 Gene3D Ribonuclease Inhibitor 272 585 IPR032675 -
Seca9g02092 909 SMART serkin_6 648 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02092 909 Gene3D Ribonuclease Inhibitor 12 271 IPR032675 -
Seca9g02092 909 SUPERFAMILY Protein kinase-like (PK-like) 621 896 IPR011009 -
Seca9g02092 909 SMART LRR_sd22_2 312 341 - -
Seca9g02092 909 SMART LRR_sd22_2 505 531 - -
Seca9g02092 909 SMART LRR_sd22_2 408 429 - -
Seca9g02092 909 SMART LRR_sd22_2 360 386 - -
Seca9g02092 909 SMART LRR_sd22_2 113 139 - -
Seca9g02092 909 Pfam Leucine Rich Repeat 91 110 IPR001611 GO:0005515
Seca9g02092 909 SMART LRR_typ_2 137 161 IPR003591 -
Seca9g02092 909 SMART LRR_typ_2 384 408 IPR003591 -
Seca9g02092 909 SMART LRR_typ_2 409 432 IPR003591 -
Seca9g02092 909 SMART LRR_typ_2 41 65 IPR003591 -
Seca9g02092 909 SMART LRR_typ_2 825 848 IPR003591 -
Seca9g02092 909 SMART LRR_typ_2 185 209 IPR003591 -
Seca9g02092 909 SMART LRR_typ_2 210 233 IPR003591 -
Seca9g02092 909 SMART LRR_typ_2 505 528 IPR003591 -
Seca9g02092 909 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 283 900 - -
Seca9g02092 909 Pfam Leucine rich repeat 186 247 IPR001611 GO:0005515
Seca9g02092 909 Pfam Leucine rich repeat 483 542 IPR001611 GO:0005515
Seca9g02092 909 PRINTS Leucine-rich repeat signature 505 518 - -
Seca9g02092 909 PRINTS Leucine-rich repeat signature 411 424 - -
Seca9g02092 909 FunFam LRR receptor-like serine/threonine-protein kinase EFR 619 725 - -
Seca9g02092 909 Gene3D Transferase(Phosphotransferase) domain 1 722 907 - -
Seca9g02092 909 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 687 908 - -
Seca9g02092 909 SUPERFAMILY L domain-like 313 568 - -
Seca9g02092 909 Gene3D Phosphorylase Kinase; domain 1 611 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02092 Seca-Chr9 33068930 33073563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02092 10 906 Receptor kinase-like Gene Family AT3G47570 43.678 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca9g02092 Pkinase 7.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02092 - - gmx:100792724 1222.22